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RAFL05-13-P19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01273)

full reading [+] show sequence

Nucleotide sequence: RAFL05-13-P19 - full reading 
ACAAACAAAC CAAACAAAAA AAAAGAAGAA GAAAGACTAT GGAGATTCCG 
CCGTCACAAT CTCCGGCGAC TCAACTCCGC CGTACAAAAT CCATATCCAA 
CATGACGACT CTAACTCCTC CAGAAGTTCC TTTCGACATA GCTTCAACGC 
CGCCGTCTTC GTTCGATTAC GAGCTCATCT CCGTAAAACC ATCCTCTTTC 
GTAGCTTACA CTTCTCTCAG AGATATCATC TCTTCTCCGA TTAACTCTTC 
ACTCAATTTA CCGTCGATCA ACGGTAGCTG CTCTCCTGTT ATATCCACCG 
CCGCCGGAGA TATCTCGATT CGTAACCGTC TCGTTAAGCA AGCTGCTTTG 
TCTTATCTTC AACCAACGGT GCTTACTTCG TCAGATGATT CTGCTGGTTC 
TCAATTCTTC CGCCGCGTTT GGCTTCACTT ATCCGCCGGG TTTCAGTTCT 
TGCGACGTGT GTTTGATTGG ATTTTTCAAT CGTTTCGTGT TCCTTTGATT 
GTCAAATAAA CTTTGATTTG ACAAAGGAAG TGATGGATTT GGTGAGAGTG 
CTCTGATGCA GTAAAGCTTG AGGATGTATA TGTTTGTTTT GAATACCTTA 
TAGATGGTGA ATTGTTGTTG CAATTGCTTG AAGATTTGGA GGCTCCAGTG 
GAAGATACAT TGCAGTAGTT GAGCAATTAC TAAATGTCCT CTTATCTTTA 
AGACAGAGAT TCCTTGATCG ATGTCAGATT CATGTTTTGA CATGTATGGA 
CATAGTAGCT TCTCGTAGAC ATAGCTAAGT CCCTGTTAGA AACCAAGAGA 
AGAAGATTGG TCGTTTTGTG AATCTAAGAA TGAGAATGAA TTCTCATTAG 
ATTTTTATTG CATTGTACTG TAGTTAGTAC CTGTGATTTC GGGTAACATA 
AGTAGATGAG AAGAGCGATT TTGATCTCTC CGTAGAGTGG TAACCTGCGG 
ATAGATGAGA TGAATCAGAA GGTTTCATAC A

Gene models with high sequence identity

  1. AT5G06280.1 [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G52520.1); ...
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther HVA22-LIKE PROTEIN 1e-06
HMMPanther TB2/DP1/HVA22 related protein 1e-06

See the detailed result >

AT5G06280.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G52520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-13-P19 introduced

  • F22750 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

2 mutant lines found