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RAFL05-14-B01

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02582)

full reading [+] show sequence

Nucleotide sequence: RAFL05-14-B01 - full reading 
CACTCGAAAA CTCATCAAAT CAAAAATCAA ACACAGAGAA GAGAAAATGG 
CCGCAGAAGG AGAAGTTATC GCTTGCCACA CCGTTGAAGA TTGGACCGAG 
AAGCTCAAAG CCGCCAACGA ATCCAAGAAA CTGATTGTGA TAGACTTCAC 
TGCAACATGG TGCCCACCTT GCCGTTTCAT TGCACCCGTC TTTGCTGACT 
TAGCCAAGAA GCACCTCGAC GTAGTCTTCT TCAAGGTCGA TGTTGACGAA 
TTGAACACTG TTGCTGAGGA GTTTAAAGTT CAGGCAATGC CAACGTTTAT 
CTTCATGAAA GAAGGAGAGA TCAAGGAGAC TGTGGTTGGT GCTGCTAAAG 
AAGAAATCAT TGCCAATCTC GAGAAGCACA AGACAGTTGT TGCTGCTGCT 
TGATTTGCTT TTCTCTCTTA CCTATTTTGC TAAAATATGT TTGGTGTTTT 
AATAAATCCT TTGTTCGCC

Gene models with high sequence identity

  1. AT5G42980.1 [+] show detail - thioredoxin 3
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther THIOREDOXIN H-TYPE-RELATED 5.4e-49
HMMPanther Thioredoxin, core 5.4e-49
FPrintScan Thioredoxin-like subdomain 4.1e-06
FPrintScan Thioredoxin-like subdomain 4.1e-06
FPrintScan Thioredoxin-like subdomain 4.1e-06
superfamily Thioredoxin-like fold 6.7e-34
ProfileScan Thioredoxin-like 14.461
PatternScan Thioredoxin, conserved site 0
HMMPfam Thioredoxin domain 2.4e-29
Gene3D Thioredoxin fold 3.8e-33

See the detailed result >

AT5G42980.1

Model type
Protein coding
Short Description
thioredoxin 3
Curator Summary
encodes a cytosolic thioredoxin that reduces disulfide bridges of target proteins by the reversible formation of a disulfide bridge between two neighboring Cys residues present in the active site. Thioredoxins have been found to regulate a variety of biological reactions in prokaryotic and eukaryotic cells.
Computational Description
thioredoxin 3 (TRX3); FUNCTIONS IN: oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: response to hydrogen peroxide, defense response to fungus, response to microbial phytotoxin; LOCATED IN: in 8 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin H-type 5 (TAIR:AT1G45145.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-14-B01 introduced

  • F06119 - rosette leaf::decreased size / rosette leaf::present in fewer numbers in organism / cauline leaf::decreased size / stem::decreased thickness / whole plant::decreased height / stem::abnormal / stem::abnormal
  • F07942 - Specific phenotypes were NOT observed.
  • F15509 - Specific phenotypes were NOT observed.
  • F28323 - Specific phenotypes were NOT observed.
  • F29120 - rosette leaf::decreased size / rosette leaf::present in greater numbers in organism / cauline leaf::decreased size / stem::decreased thickness / stem::abnormal / stem::abnormal

Mutant lines with disrupted or induced

5 mutant lines found