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  3. RAFL05-14-C08

RAFL05-14-C08

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02584)

full reading [+] show sequence

Nucleotide sequence: RAFL05-14-C08 - full reading 
AAAACATAAC TGCAGTCTCT TCTTGTTTCG ATGGAACTCA ATAAGGATCA 
GACAGTCATG TCGGAGGATA AAAAGCCTCA AGATCCAAAT CCCAGATTTG 
CTTGCGAAGG TTGCAGCGTT CTGCTCGACA TCAACGATGG TGACCGTCTC 
GTCTTCGCTC GTTTATCTAG TGGCGCTATA TTAAAAATTG GGAATAAGAA 
TTATTCTTTA AAGCCATTGA TCGGAGCTCC GTTTGGATCT CTGTTCCAAG 
TCGAAACCGG AGAAGATGGT TCTTTCCTCT CTCGCATTCT TCCCATTAAA 
CAAGAAAGTA ACAGTAATAA TGTTATGGAC GATTCGAGAG ATAATCGAGA 
AATCGTCGAC AATAATGAAG CTCAGAATCT TACTGGTGAA GAAATTGAAG 
CTATGCGGAG AGAGGGTGCA AAAGGGGATG AAATTATTGA AGCTCTAATT 
GCAAACAGCA AAACTTTTGA TAAGAAGTTT CAGTTGTCTC AGGAAAAATA 
TAAGCTTAAA AAGCAGAAGA AATATGCACC AAAGCTGCTT CTTCGACGGC 
CTTTTGCTCG AAGTATATGT GAAGCTTATT TCAAGAAATA CCCAGCCAGA 
ATTGGATTCT TACGAGTAGA TGCGTTATCT CTTCTGTTAA CGATGGCTAA 
TGTCACTGCA TACTCGGATG TGCTTGTGGT GGATATGGTT GGTGGCCTTG 
TCACTGGTGC AGTGGCTGAA AGATTAGGAG GCACTGGTTA TGTTTGCAAT 
ACATATAAGG GAAGTTCTCC TTATCCTGTG GAGATGGTAA GGATGTTCAA 
CTTTAGTGAC AAGGTTTTAA AGAGGATCGT GCAGTCATCG ATAAACGAGC 
TCTCGTCAGC CAAAACTGCG TCTACTGAAG GAAACAATCA ACAAGAAGGA 
GTTTGCAAAG CTGAGAACAA TATTAATGAA ACAGCTACAT CTGATGTTAT 
GGTTGAAGAA ATATCTGTGA CAACTGAGGC TGGAGTAGTA GATATTGTTG 
TACCAGAGAG CAAAATTATC AAAGCCGCAA AAGCTGGAGC CAAAGCTTCA 
AAAGAAACAA TAGAGATGTG GCAAGAAAAC GGTTTTTCGA GTCTAATCAT 
GGCTGCGCAA GACCAAGACC CATGGATCGT AGCTAAGGAT GTATTGCCAC 
TACTGTCCTA CTCTGCTCCT TTTGCAATAT ATCATCAGTA TTTACAGCCG 
CTGGCGACAT GTATGCACAA GCTTCAACAG GGTAAAATGG CGATCAATCT 
GCAAATAACA GAACCATGGC TACGCGAATA TCAGGTGCTT CCTTCAAGAT 
CTCACCCTCA CATGCAGATG AGTTCTTTTG GAGGCTATGT TCTGAGTGGC 
ATCAGAATCT CTACCACTTG ACTGTTGTTT TCATAACCAG AAACTGTGGT 
TTGATGTTTG GTCTTTTCTT TCACAACGTC TTTCTGGTTG TTTTGTTGTT 
GTAACATTAA GGGCTTAGAT TATGAGAACA CTGAAAATAA TTGAAAATTT 
TGACGGATAT TTGAAGTTAA TACTAGCATT TACCTTCTAA TTTTCTTGAT 
GGTTTTGTAT GACCACACCT GAAGACTGAT AGTCTGATAC GCTTGAACTA 
TTTTTGGATG ATTAGTGCAT CCGATC

Gene models with high sequence identity

  1. AT2G45730.1 [+] show detail - eukaryotic initiation factor 3 gamma subunit family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther Eukaryotic initiation factor 3, gamma subunit 6.5e-88
HMMPfam Eukaryotic initiation factor 3, gamma subunit 1e-69
HMMPIR tRNA (adenine-N(1)-)-methyltransferase, non-catalytic TRM6 subunit 2.3e-195

See the detailed result >

AT2G45730.1

Model type
Protein coding
Short Description
eukaryotic initiation factor 3 gamma subunit family protein
Computational Description
eukaryotic initiation factor 3 gamma subunit family protein; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation, regulation of translational initiation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Eukaryotic initiation factor 3, gamma subunit (InterPro:IPR007316), tRNA (adenine-N(1)-)-methyltransferase, non-catalytic TRM6 subunit (InterPro:IPR017423); Has 402 Blast hits to 378 proteins in 203 species: Archae - 0; Bacteria - 4; Metazoa - 118; Fungi - 152; Plants - 45; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-14-C08 introduced

  • F21038 - Specific phenotypes were NOT observed.
  • F24234 - seed::increased size / seed::increased length / seed::decreased width

Mutant lines with disrupted or induced

3 mutant lines found