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  3. RAFL05-14-C13

RAFL05-14-C13

RIKEN Arabidopsis Full-length cDNAs

Resource: (pdz87481)

5 prime EST [+] show sequence

Nucleotide sequence: RAFL05-14-C13 - 5 prime EST 
GACTTTCTCT CCACCCTTCT CTCTCTCCTT CTGAAAGTCT CTCTCTTTGC 
CGTCGTTAGC CTCTTCCTAC ACNTTGGGGC NTGCGATTCT TCCAATCCTC 
CGATTTCAAT TTCATCCTCT CAATCATAGT TTGAAATCAT CGAGCTTTTA 
CGGTGCNTGT TGGTGTTTGA CGCCGTAAAA TTCGATCCTT TTTTATACAT 
TTGATGTTGA TTTTATCGAT AGTTTTGTGA GATCGATTTT TTAGGGTTTC 
GAGTTTGGCG CTGACTTGAG GGTTTGATTG GATGAGAATA AGGGGTTATG 
GGACTTGAGT CAATTGGGTT TGTCTCCCTA ATCATCGCAA ATTCCTGATT 
TCTCAGCTCT TTGGAAGGAA TTAGGATTCG TTGATTTCGA GTTTTGTGTT 
GTGTTGGTTG ATGAGAGAGT TGGGTTTGGT CAATTGAGGG GTTTAGGTGT 
TGTTTTACTG TTTTGATTCT GATCATGGAT GACATTGATT CAAGCGATGG 
TGCTGCGGCT GCACGAGCTG GTGAGATTGG CTCTATTGGG GTATCCACAC 
CGTGGAAGCC AATTCAGCTG GTTTTTAAGC GTTATTTGCC ACAAAATGGG 
TCTGCTAGCA AAGTTCATGT TGCCGTGAAG AAGCCGGTGG TGGTGAGACT 
AACTAGGGAC TTGGTTGAGA CGT

Gene models with high sequence identity

  1. AT5G35980.2 [+] show detail - yeast YAK1-related gene 1
    E-value: 0; Score: 99.55

3 prime EST [+] show sequence

Nucleotide sequence: RAFL05-14-C13 - 3 prime EST 
CCAATTATAA CATACTTTTT TTTTTTGTTT ATTTGTGCAA AAAGCACAAT 
GAATAAGCAC GTTCTGATCA GAAGCCCACA AGCCATGAAC TAAGTTTGTT 
TCTTGTCTCA GTACAACTTT TGTTCCCACA CTTCTAACAA GAAGATTGCA 
C

Gene models with high sequence identity

  1. AT5G35980.1 [+] show detail - yeast YAK1-related gene 1
    E-value: 1e-75; Score: 99.33

AT5G35980.1

Model type
Protein coding
Short Description
yeast YAK1-related gene 1
Computational Description
yeast YAK1-related gene 1 (YAK1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G17750.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G35980.2

Model type
Protein coding
Short Description
yeast YAK1-related gene 1
Computational Description
yeast YAK1-related gene 1 (YAK1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G17750.1); Has 91682 Blast hits to 90157 proteins in 2771 species: Archae - 99; Bacteria - 7981; Metazoa - 36897; Fungi - 11192; Plants - 18283; Viruses - 359; Other Eukaryotes - 16871 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-14-C13 introduced

  • F16039 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

2 mutant lines found