1. Home
  2. Full-length cDNAs
  3. RAFL05-14-E15

RAFL05-14-E15

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09335)

full reading [+] show sequence

Nucleotide sequence: RAFL05-14-E15 - full reading 
AAGAGATCGA AAATGGCTGA TGTTCACAAA GGAAAGGTTT GTGTAACCGG 
TGCCGGAGGG TTTTTGGGTT CGTGGGTCGT CGATCTTCTT CTCTCTAAGG 
ATTACTTCGT CCATGGCACT GTCAGAGACC CTGATAATGA AAAGTATGCT 
CATTTGAAGA AGCTCGAGAA AGCTGGTGAC AAACTCAAGC TCTTCAAGGC 
TGATTTGTTG GACTACGGCT CTCTTCAATC TGCTATTGCA GGTTGCAGCG 
GAGTCTTCCA TGTCGCTTGC CCGGTTCCAC CAGCTTCAGT CCCTAATCCT 
GAGGTAGAAT TGATCGCACC TGCTGTGGAT GGCACGCTGA ATGTGCTTAA 
GGCATGCATT GAAGCGAATG TTAAGCGTGT TGTGTATGTT TCCTCTGTAG 
CTGCGGCTTT CATGAACCCT ATGTGGTCAA AGAATCAAGT ATTAGATGAG 
GCATGTTGGT CTGACCAGGA ATACTGCAAG AAAACTGAGA ATTGGTATTG 
TCTGGCAAAG ACACGAGCAG AGAGTGAAGC TTTTGAATTT GCAAAACGAA 
CCGGACTTCA TCTCGTCAGT GTTTGCCCTA CCCTTGTTTT GGGACCTATA 
CTGCAGCAGA ACACAGTAAA TGCTAGTAGC CTGGTTCTTC TTAAGCTTCT 
TAAAGAGGGT TTTGAAACAC GTGATAACCA AGAACGTCAT TTGGTAGATG 
TGCGTGATGT AGCTCAAGCT TTACTCTTGG TTTATGAGAA AGCAGAAGCT 
GAAGGAAGAT ACATATGTAC ATCCCACACG GTTAAAGAAG AGATTGTGGT 
TGAGAAGCTG AAGAGTTTTT ATCCACATTA CAACTACCCA AAGAAATACA 
TTGATGCGGA AGATAGAGTG AAGGTGAGTT CAGAGAAATT GCAGAAGTTG 
GGTTGGACTT ACCGGCCGTT GGAGGAAACA CTTGTGGATT CTGTTGAGAG 
CTACCGGAAA GCTAAGCTTG TGGACTGAAA ACTTGGAAAG AAGAGCAAAA 
TAGTGTTTTA GCTTCATATG TTATAGTTAT AGTGTTCCAT TCTGCACACA 
CACACACACT CTCTCATCGT TTACTCAATA ATAAGAGTTG TGCATTCACC 
ATGGATTTCT GAGTTTTTGT TATTTTCTTT TTAGATATCA TTACTTTTAT 
TACCAATCTA CAATTTTCTT TCCATA

Gene models with high sequence identity

  1. AT2G33590.1 [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther CINNAMOYL-COA REDUCTASE 6.8e-153
HMMPanther NAD DEPENDENT EPIMERASE/DEHYDRATASE 6.8e-153
Gene3D NAD(P)-binding domain 4.1e-40
superfamily NAD(P)-binding domain 5.1e-60
HMMPfam NAD-dependent epimerase/dehydratase 6.7e-27

See the detailed result >

AT2G33590.1

Model type
Protein coding
Short Description
NAD(P)-binding Rossmann-fold superfamily protein
Computational Description
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: coenzyme binding, binding, cinnamoyl-CoA reductase activity, catalytic activity; INVOLVED IN: response to cadmium ion, lignin biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G33600.1); Has 13062 Blast hits to 13044 proteins in 1974 species: Archae - 275; Bacteria - 5592; Metazoa - 467; Fungi - 894; Plants - 2514; Viruses - 60; Other Eukaryotes - 3260 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-14-E15 introduced

  • F09933 - Specific phenotypes were NOT observed.
  • F12340 - seed::increased size / seed::increased length
  • F13511 - Specific phenotypes were NOT observed.
  • F22845 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

10 mutant lines found