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  3. RAFL05-14-F03

RAFL05-14-F03

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01271)

full reading [+] show sequence

Nucleotide sequence: RAFL05-14-F03 - full reading 
TTACAGTGAT TCAAGAGGCC TTCCAGGAGT TAGGAAAGAG GTTGCTGAGT 
TCATTCAACG GCGTGATGGG TATCCAAGTG ACCCAGAACT CATCTTTCTC 
ACTGATGGAG CTAGCAAAGG TGTGATGCAA ATCTTGAATT GTGTTATACG 
CGGTAATGGA GATGGGATTC TAGTTCCGGT TCCACAGTAT CCACTTTACT 
CAGCTACCAT ATCACTGTTA GGTGGTACTC TTGTTCCTTA CTATCTTGAT 
GAGTCTGAAA ACTGGGGACT TGATGTTGCT AACCTTCGAC AATCCGTTGC 
TCAGGCTCGT TCTCAAGGGA TAACAGTAAG GGCAATGGTG ATCATTAACC 
CTGGGAACCC AACTGGCCAG TGTCTAAGCG AAGCTAACAT AAGAGAGATA 
TTGAAGTTCT GTTATAACGA GAAACTGGTT CTTCTGGGAG ACGAGGTTTA 
TCAGCAGAAC ATATACCAGG ATGAGCGTCC CTTTATCAGC TCCAAGAAGG 
TTTTGATGGA AATGGGTTCG CCGTTCAGCA AGGAAGTTCA GCTTGTATCT 
TTTCACACAG TCTCTAAAGG ATATTGGGGT GAATGTGGAC AGCGAGGTGG 
ATACTTTGAG ATGACCAACC TCCCTCCAAG GGTTGTTGAG GAGATATACA 
AGGTTGCATC AATTGCCCTC AGCCCTAATG TCTCTGCGCA AATCTTTATG 
GGTTTGATGG TTAATCCTCC AAAGCCTGGA GACATTTCAT ATGACCAGTT 
CGCCCGTGAA AGCAAGGGGA TTCTTGAATC TTTGAGAAGA AGAGCAAGGC 
TCATGACAGA TGGATTCAAC AGCTGCAAAA ACGTCGTGTG CAATTTCACA 
GAAGGTGCAA TGTATTCGTT TCCTCAAATA CGGTTACCAA CGGGAGCTCT 
CCAAGCTGCA AAACAAGCTG GAAAAGTGCC AGACGTTTTC TACTGTCTCA 
AGCTCTTAGA AGCCACAGGA ATCTCCACAG TACCTGGCTC TGGATTTGGA 
CAGAAAGAAG GTGTGTTCCA TCTGAGGACA ACAATCCTGC CAGCAGAAGA 
TGAGATGCCG GAGATCATGG ATAGCTTCAA GAAGTTCAAC GACGAGTTCA 
TGACTCAGTA TGATAATAAC TTTGGTTATT CGAAAATGTG ATTACTTCTT 
CTTCGAACGA CTATTGTGTT CTGCTACACT CTTTAAAGCT AAATCTCTGT 
AGTACACTCT TTCTCTTTGC CCTATTCTAT AAACCATATC TCTCTCTTTG 
TGTCTCTTTT TTTTGGGTGT AAACTCTCTC TTGTGTCTCT ATTTCTATTT 
TCAATTGGAA ACTGATTAAG ATCTTTTC

Gene models with high sequence identity

  1. AT1G23310.1 [+] show detail - glutamate:glyoxylate aminotransferase
    E-value: 0; Score: 99.92

 

InterPro Scan Digest

Program Description E-value
superfamily Pyridoxal phosphate-dependent transferase, major domain 4.5e-64
HMMPfam Aminotransferase, class I/II 2.1e-32
Gene3D Pyridoxal phosphate-dependent transferase, major region, subdomain 2 3.59999643436007e-16
FPrintScan 1-aminocyclopropane-1-carboxylate synthase 0.00000036000003870074
FPrintScan 1-aminocyclopropane-1-carboxylate synthase 0.00000036000003870074
FPrintScan 1-aminocyclopropane-1-carboxylate synthase 0.00000036000003870074
HMMPanther PTHR11751 0
HMMPanther PTHR11751:SF29 0
Gene3D Pyridoxal phosphate-dependent transferase, major region, subdomain 1 8.30001403791594e-45

See the detailed result >

AT1G23310.1

Model type
Protein coding
Short Description
glutamate:glyoxylate aminotransferase
Curator Summary
Identified by cloning the gene that corresponded to a purified protein having glyoxylate aminotransferase activity. Localized to the peroxisome and thought to be involved in photorespiration/ metabolic salvage pathway.
Computational Description
glutamate:glyoxylate aminotransferase (GGT1); FUNCTIONS IN: glycine:2-oxoglutarate aminotransferase activity, L-alanine:2-oxoglutarate aminotransferase activity, alanine-glyoxylate transaminase activity; INVOLVED IN: photorespiration; LOCATED IN: apoplast, peroxisome, chloroplast, vacuole, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: alanine-2-oxoglutarate aminotransferase 2 (TAIR:AT1G70580.4); Has 27976 Blast hits to 27968 proteins in 2949 species: Archae - 777; Bacteria - 19095; Metazoa - 617; Fungi - 736; Plants - 1276; Viruses - 0; Other Eukaryotes - 5475 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-14-F03 introduced

  • F08207 - Specific phenotypes were NOT observed.
  • F12927 - seed::increased size / seed::increased length
  • F14218 - rosette leaf::increased size / rosette leaf::abnormal / rosette leaf::present in greater numbers in organism / cauline leaf::abnormal / stem::abnormal
  • F27426 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found