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  3. RAFL05-14-G18

RAFL05-14-G18

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07305)

full reading [+] show sequence

Nucleotide sequence: RAFL05-14-G18 - full reading 
ACTCATCACA ATAGCGGGAA ACTCATCCGG CTTCTGGAAA TTTCCGTTTA 
TCCGATTCGT TCTCACGAGA TGATGGCTCG TTACCACAGG AGATCGATGA 
TCTTGTGCTT AGTTCTGCTC TCATTAAGCA TATCGCCGAG CCAAGGCTTC 
CTAGGGACAG AGGAAAAGAT CAAATCCGCT GTCTTTTACT CACCAAAACT 
TGTGATGAAT CCAGGATCAG TTGCAAATCC TTACTTATTC GACATCGATT 
TCCCAAGAGG TCATATCGGC CTCAAAGCTT TCGATGCTGA AGTGGTTGAC 
GAAGCGGGCA AACCCGTTCC TCTACACGAG ACCTATCTCC ACCATTGGAT 
TGTCGAGCCA TACTATGTAC GTAAAGGTTC CAAGCTTCCA CAGAGAGAAA 
TGTTCAGGAA TCATGGATTT TCCAGGGAAG ATCCTGAAAG CAATCTTGAT 
TCCAAGTCAG ATATTATTCT TGTGAAAAAT GGAGGGTTGT GCAGGAGTTT 
AACACTCAGA CATTTCTTTG GTTTAGGATC AGAAACCCGC GAAACCTCGA 
CGTATGTTCC TGATCCCTAC GCTATTGAAA TCGGTAATCC TGAGGAAACA 
CCTGATGGTT ATGAATTCAA ATGGCTTCTT AACATTCACG CGATAGACAC 
CAGAGGTGTG GAAGATAAGA AAGGATGCAT AGAATGTTTT TGTGATCTGT 
ATAATGTTAC CATTGATGAG TATGGTCGAG CTATAAGGCC TGGATACAAA 
GGAGGTTTAT ACTGCTGCTA TGATAAGACT CAATGTCGGG TGAAAAGCGG 
ATTTGACAAT GGGGAGAAAA CAAGAACTCT GTATTTGAAG TATACCGTGA 
GATGGGTTGA TTGGGACAGC TCGGTTTTGC CCGCTAAGGT TTATATTTTC 
GATGTTACAG ATTCTTGGGA AAGATCAAAA GGAGATAGCC AAGAACATAT 
TTGCCATGTG GAATACGAGG TGAAACCGTG CAAAACCAAT GGCGATGGAT 
GCGTTGACGT TAAGAAAAAG AGCTTAGTGA TGCCATTTGA TGGGTATATT 
GTCTACGGGG TAGCTCACCA GCACGCTGGT GGTATCGGTG GTGCTCTATA 
CCGAGAGAAC GGTGAAGGGA TATGCGCTTC AATGCCGAAG TATGGCAATG 
GAGATGAACC TGGAAACGAA GCTGGTTACA TTGTTGGAAT GTCGTCTTGT 
TATCCAGCTG ATCCAGTGAA AGTGAGCTAT GGAGAGACAT TGACTTTGGA 
ATCTAATTAC AGTAATGCCG TTGGTCATAC CGGAGTTATG GGACTCTTTT 
ACATCCTCGT TGCTCAGCAG CTGCCGGAAC CAGATAGCTC CTTGCCTAAT 
AAACAACATT TTGAGGCACC TGCGAGAAGC TTGAGCTTTT TAGCCATTTT 
TGCAGTGACG GTAGTTGTGG CTGTTGTGGT TTTAATAGCC GCCGTGATAT 
ACCGGAGACA GAAACGGGAA GATGGTTACC AATCACTTAG TACTTAAAAA 
AGAGCAAAAA CCATGTCGAC TCTATATATG TCTTCAAAGT GAATTCTGTT 
TGTATACATA GAATAAAAGA TTATTTTGTT GTCATCTTCC TCTGATGTGA 
TATCTCTGTA ATAGTTACGT GTAAGAAGAA CTTTTCTTTC C

Gene models with high sequence identity

  1. AT5G61820.1 [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: va...
    E-value: 0; Score: 99.94

 

InterPro Scan Digest

See the detailed result >

AT5G61820.1

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Stress up-regulated Nod 19 (InterPro:IPR011692); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-14-G18 introduced

  • F01209 - Specific phenotypes were NOT observed.
  • F08908 - Specific phenotypes were NOT observed.
  • F10115 - seed::increased size / seed::increased length
  • F15703 - Specific phenotypes were NOT observed.
  • F16231 - Specific phenotypes were NOT observed.
  • F26306 - Specific phenotypes were NOT observed.
  • F26629 - Specific phenotypes were NOT observed.
  • F28937 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

9 mutant lines found