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Full-length cDNAs
RAFL05-14-K14

RAFL05-14-K14

RIKEN Arabidopsis Full-length cDNAs

ACGGAGATTG TAACAAGGAA ACCGCCGTCG CCGGATCTGA TAGTGCATAT 
CCATGAAGTA GAAGACGAAG AAACTTACTT TCTGATCTTA GAACGGAGTA 
TATGTACAGA AGATTCGCGT CCCTCAATTT TTGATCTCAA GGGTCGGGTT 
TACCTTTTTT TCCTTCTTAT TTTTGGTGGC TTTGCGTTTT CTCATTCGAC 
GATTTCTGGA TTTGGGGATT TCAAAACCAT GAGGAAGAAG CTCGATACTC 
GGTTCCCAGC TGCTCGTATT AAAAAGATTA TGCAAGCTGA TGAGGATGTT 
GGCAAGATAG CTTTGGCAGT GCCTGTCTTA GTCTCAAAAT CTTTGGAGTT 
GTTCTTGCAA GACCTTTGTG ATCGTACATA TGAAATTACC CTTGAAAGAG 
GTGCCAAGAC TGTGAGCTCA TTGCACCTAA AACATTGTGT GGAAAGATAT 
AACGTGTTTG ATTTTCTGAG GGAAGTTGTG AGTAAGGTGC CTGACTATGG 
CCATTCCCAA GGGCAAGGAC ATGGTGATGT TACCATGGAT GATCGCAGCA 
TCTCCAAGAG AAGGAAGCCC ATCAGCGATG AAGTGAATGA CAGTGACGAG 
GAATATAAGA AAAGCAAAAC GCAAGAGATA GGGAGTGCTA AGACCAGTGG 
CAGGGGTGGT AGAGGAAGAG GGCGAGGAAG AGGTCGTGGT GGACGAGCTG 
CAAAAGCAGC CGAAAGAGAG GGTCTCAACC GCGAGATGGA AGTAGAAGCC 
GCCAATTCTG GACAGCCACC ACCAGAAGAC AATGTCAAGA TGCATGCGTC 
AGAGTCATCA CCACAAGAGG ATGAGAAGAA AGGCATCGAC GGCACAGCAG 
CATCGAACGA AGACACCAAG CAACACCTTC AAAGTCCCAA AGAAGGCATT 
GACTTTGATC TCAACGCTGA ATCCCTCGAC CTAAACGAGA CCAAACTGGC 
ACCAGCCACA GGCACAACCA CAACCACAAC TGCAGCAACA GACTCTGAGG 
AGTATTCGGG CTGGCCTATG ATGGACATAA GCAAAATGGA TCCAGCACAG 
CTTGCTAGTC TGGGTAAGAG GATAGACGAG GATGAGGAAG ATTATGACGA 
AGAAGGCTAA GTCATAACAG CACTATAGGA TATATAGAGT AGCAGCGTTT 
AGCAGTTTGT CTAGAAAATG CTTCTTCTGT CATCAAAATC TTCTCCTGTT 
TCCATTTATT GTATGAACCA AAGATTGCAT GCACTCTATG AAACTTAATT 
TATTCTCG

Gene models with high sequence identity

AT3G12480.1 [+] show detail - nuclear factor Y, subunit C11
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
superfamily	Histone-fold	2.2e-19
HMMPanther	NEGATIVE COFACTOR 2 TRANSCRIPTIONAL CO-REPRES	2.8e-162
HMMPanther	HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELAT	2.8e-162
HMMPfam	Transcription factor CBF/NF-Y/archaeal histone	3.1e-19
Gene3D	Histone-fold	6.4e-24

See the detailed result >

AT3G12480.1

Model type: Protein coding
Short Description: nuclear factor Y, subunit C11
Computational Description: "nuclear factor Y, subunit C11" (NF-YC11); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, intracellular; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G19490.1); Has 1099 Blast hits to 1099 proteins in 222 species: Archae - 0; Bacteria - 6; Metazoa - 308; Fungi - 314; Plants - 371; Viruses - 0; Other Eukaryotes - 100 (source: NCBI BLink).
Link: InterPro Scan - TAIR

Mutant lines with RAFL05-14-K14 introduced

F20602 - seed::increased size

Mutant lines with disrupted or induced

6 mutant lines found