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RAFL05-14-K17

RIKEN Arabidopsis Full-length cDNAs

Resource: (pdz87484)

5 prime EST [+] show sequence

Nucleotide sequence: RAFL05-14-K17 - 5 prime EST 
TAAAAGCTTG CAAAAACCAT AAGCTTATCT ACTTACTCAT CTCTCTCACA 
AATCATTTTC TCAGACTTCT CTCTTTCTCT TAAACCATGC CTGAGGCACC 
AAAGAAAGAA TCTTTAGAGG TTTTCGATCT GACGCTTGAC CAAAAAAACA 
AGCAAAAGCT TCAGTTGATC GAAGAACTCA CCTCTAACGC CGACCAAGTC 
CAAAGACAAG TCTTGGAGGA GATCTTGACC CGCAATGCTG ACGTGGAGTA 
TCTCAGGCGA CACGACCTCA ACGGTCGCAC TGACCGTGAG ACTTTCAAAA 
ACATCATGCC CGTTATCACC TACGAAGATA TTGAGCCTGA GATCAACAGG 
ATCGCTAATG GTGATAAATC ACCTATCCTC TCTTCCAAAC CCATCTCTGA 
GTTCCTCACA AGCTCTGGGA CATCTGGTGG GGAGAGGAAG CTAATGCCAA 
CAATCGAAGA GGAGCTAGAC AGGAGATCAC TCCTCTACAG TCTCTTGATG 
CCTGTGATGA GCCAGTTCGT TCCTGGTCTC GAAAACGGCA AAGGAATGTA 
TTTCTTGTTC ATCAAGTCCG AATCCAAGAC TCCAGGAGGC CTCCCTGCTC 
GTCCTGTCTT AACCAGTTAC TACAAATCTT CCCATTTCAA AGAAAGACCC 
TATGAT

Gene models with high sequence identity

  1. AT4G27260.1 [+] show detail - Auxin-responsive GH3 family protein
    E-value: 0; Score: 100.00

3 prime EST [+] show sequence

Nucleotide sequence: RAFL05-14-K17 - 3 prime EST 
GGTTGGAGAA AACATGATTT GCCTTTTGTA CAACTGGTTT TCAAACCCAC 
AGGGACTATG GATATTAAAA GGATAACAAA AAAAAAAGAA CAAAAGATTA 
AACTAAAATT AAGATTAGAG AAGACATCAT CATTTGCAAG TCCAAGTCCC 
AAACCTTCTA GCTCAAAGAG AGTCTCTTCA CGTTCCACAT TCCATCTTAG 
TTACTCCCCC ACTGTTTGTG ACCAGGAACC CATTTAGGAC ACTTGGGGCT 
GAAGTAACTA TCAACAACCC TTGAGTTCAA TAGCTCGATA ATTGGAGCAA 
ACTTCACGCA TCTCGGCGTC TTATACTGAT TAATCGATGC TCCCAAGCTG 
ATTGCGTAAT CCATGAGCTT ATCGAATGTC CCTGGCTCAA CAATCTTGAT 
CTCAAGCGGG CCTATGGACT TGTCACTAAC CCTTCCTTGT CTATAAACAG 
TGTTGAATGA CTCTTCTACA GCTAAGCAGC AGTCCTCGAA GACCGAAGGA 
GGGATCGGTG TGTTTCCATC CAAACATAGC T

Gene models with high sequence identity

  1. AT4G27260.1 [+] show detail - Auxin-responsive GH3 family protein
    E-value: 0; Score: 100.00

AT4G27260.1

Model type
Protein coding
Short Description
Auxin-responsive GH3 family protein
Curator Summary
encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. Lines carrying insertions in this gene are hypersensitive to auxin.
Computational Description
WES1; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT5G54510.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-14-K17 introduced

  • F22738 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

2 mutant lines found