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  3. RAFL05-14-L02

RAFL05-14-L02

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02607)

full reading [+] show sequence

Nucleotide sequence: RAFL05-14-L02 - full reading 
GCAACCATTT CTCTGCTGTT TCTTCGTCGT TTAGCTTCAG AGGACGACAA 
TCCGGTAGGC GAGAGAGAGA GATTAATCAA TCGGCGACCT TTTTAATTCG 
CTCGTAATTC GTTTTGATTT TCGTGTTTTT GCAACGAATT TAACAACTTC 
TGTGTGTGTG GGTGTGAGTT TCTTAAGAGA AGTCAGAAAC AATGATTGGG 
TTGTTTAAAG TAAAGGAAAA GCAAAGAGAA CAAGCTCAAA ATGCTACTAG 
AGGAGGAGCT TCTGTTAAGA AGCAATCTGC TGGCGAACTT CGTCTTCACA 
AAGATATATC AGAGTTGAAC CTTCCTAGCT CTTGTTCAAT ATCTTTTCCA 
AATGGCAAAG ATGATTTGAT GAACTTTGAA GTATCCATTA AACCTGATGA 
TGGATATTAC CACAATGGTA CGTTTGTTTT CACATTCCAA GTCTCTCCTG 
TGTATCCACA TGAAGCTCCA AAAGTTAAAT GCAAAACCAA GGTTTATCAT 
CCCAATATCG ATTTGGAAGG AAACGTTTGC CTGAACATCT TGCGTGAAGA 
TTGGAAACCT GTTCTTAACA TTAACACAGT TATCTACGGA CTCTTCCATC 
TGTTCACGGA ACCCAATTCT GAAGATCCCT TGAACCATGA TGCTGCAGCA 
GTTTTGAGGG ATAACCCAAA GCTCTTTGAG ACCAATGTTC GCAGGGCCAT 
GACCGGTGGA TATGTCGGTC AGACCTTTTT CCCGCGTTGT ATCTAACAAA 
GCTCTGGTTT GTCTTCTTCA AGGAAAAAGA TAAGAACCAA ACCCTTTGTC 
CGCCATTGTA TTTCTTCTCT TTCTCAAGGA CCCTCGTTTG TTTGTTTGAT 
CTTGTAAAAT TACATTCCGC GTTAAAGTAA CCCTTTCCTT ATATCC

Gene models with high sequence identity

  1. AT4G36800.1 [+] show detail - RUB1 conjugating enzyme 1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMSmart Ubiquitin-conjugating enzyme, E2 2e-35
Gene3D Ubiquitin-conjugating enzyme/RWD-like 7.6e-40
ProfileScan Ubiquitin-conjugating enzyme, E2 28.163
HMMPfam Ubiquitin-conjugating enzyme, E2 1.5e-37
superfamily Ubiquitin-conjugating enzyme/RWD-like 1.2e-44
HMMPanther RUB1 conjugating enzyme Ubc12 4.7e-110
HMMPanther UBIQUITIN-CONJUGATING ENZYME E2 4.7e-110
PatternScan Ubiquitin-conjugating enzyme, E2 0

See the detailed result >

AT4G36800.1

Model type
Protein coding
Short Description
RUB1 conjugating enzyme 1
Curator Summary
RUB1 conjugating enzyme that conjugates CUL1 and is involved in auxin response and embryogenesis. RCE1 protein physically interacts with RBX1, which may be the E3 for CUL1.
Computational Description
RUB1 conjugating enzyme 1 (RCE1); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608), RUB1 conjugating enzyme Ubc12 (InterPro:IPR015580); BEST Arabidopsis thaliana protein match is: Ubiquitin-conjugating enzyme family protein (TAIR:AT2G18600.1); Has 8473 Blast hits to 8470 proteins in 386 species: Archae - 0; Bacteria - 0; Metazoa - 3871; Fungi - 1731; Plants - 1533; Viruses - 20; Other Eukaryotes - 1318 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-14-L02 introduced

  • F27108 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

11 mutant lines found