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  3. RAFL05-14-N11

RAFL05-14-N11

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17086)

full reading [+] show sequence

Nucleotide sequence: RAFL05-14-N11 - full reading 
GATCATCTCA TTAACAAAAA TAAAACACAC AATCTCAAGA TTTTCTACTT 
CTTATTACAA AGATTCAATC TTCTTGTTTC TTCTTGCAAC CATGAGTCTT 
CTTGCAGATC TTGTTAACCT TGACATCTCA GACAACAGTG AAAAGATCAT 
CGCTGAATAC ATATGGGTTG GTGGTTCTGG TATGGACATG AGAAGCAAAG 
CCAGGACTCT CCCTGGACCT GTGACCGATC CATCAAAACT TCCAAAGTGG 
AACTATGATG GTTCAAGCAC TGGTCAAGCT CCTGGTCAAG ACAGTGAAGT 
GATCTTATAC CCTCAAGCAA TTTTCAAAGA TCCATTCCGT AGAGGCAACA 
ACATCCTTGT TATGTGTGAT GCTTACACTC CAGCGGGAGA GCCAATCCCT 
ACTAACAAGC GACATGCTGC GGCTGAGATC TTTGCTAACC CTGATGTTAT 
TGCTGAAGTG CCATGGTATG GAATCGAACA AGAATACACT TTGTTGCAGA 
AGGATGTGAA CTGGCCTCTT GGATGGCCCA TTGGTGGCTT CCCTGGCCCT 
CAGGGACCAT ACTACTGCAG TATTGGAGCT GACAAATCTT TTGGAAGAGA 
CATTGTTGAT GCTCACTACA AAGCCTCTTT GTATGCTGGA ATCAACATCA 
GTGGGATCAA TGGAGAAGTC ATGCCGGGAC AATGGGAGTT CCAAGTCGGC 
CCATCGGTCG GTATCTCAGC TGCTGATGAA ATATGGATCC CTCGTTACAT 
TTTGGAGAGG ATCACAGAGA TTGCTGGTGT GGTTGTATCT TTTGACCCAA 
AACCTATTCC TGGTGACTGG AATGGAGCTG GTGCTCACAC CAATTACAGT 
ACTAAATCAA TGAGGGAAGA AGGAGGATAC GAGATAATCA AGAAGGCGAT 
CGAGAAGCTT GGCTTGAGAC ACAAGGAACA CATTTCCGCT TACGGTGAAG 
GAAACGAGCG TCGTCTCACG GGACACCATG AAACTGCTGA CATCAACACT 
TTCCTTTGGG GTGTTGCGAA CCGTGGTGCA TCGATCCGAG TAGGACGTGA 
CACCGAGAAA GAAGGGAAGG GATACTTTGA GGATAGGAGG CCAGCTTCAA 
ACATGGACCC TTACGTTGTT ACTTCCATGA TTGCAGAGAC TACACTCCTC 
TGGAACCCTT GAAAGGATGA TCCGTAACTC TTGAAGTTGC TTCTGATTGG 
GTTTTTTGGA AGTTCCAAGC TTGTCTTTTC TCTACAGTGT GTATTAAGCA 
ATTGTACCGG TTGACACTGC CGGAGTTTGT GATTTGGGGC CTTTCTTTCT 
TTTTCTTCTT TTTATAATCT TTTGGGTTCT GTGGTTAGAG CAAATTCGGT 
TTGCTCTGTT TGTTTGACCT TTATTGAAAC CTTTGGTATT GGTACTAATA 
ATACAATCTG AAAAGGCCTC TTCATGTTCC AAAAAAAAAA

Gene models with high sequence identity

  1. AT1G66200.1 [+] show detail - glutamine synthase clone F11
    E-value: 0; Score: 99.93

 

InterPro Scan Digest

Program Description E-value
HMMPfam Glutamine synthetase, catalytic domain 9.1e-61
HMMPfam Glutamine synthetase, beta-Grasp 1.1e-18
Gene3D Glutamine synthetase/guanido kinase, catalytic domain 1.2e-55
PatternScan Glutamine synthetase, beta-Grasp 0
PatternScan Glutamine synthetase, catalytic domain 0
superfamily Glutamine synthetase/guanido kinase 7.4e-67
superfamily Glutamine synthetase, beta-Grasp 8.5e-18
HMMPanther GLUTAMINE SYNTHETASE (GLUTAMATE--AMMONIA LIGA 4.2e-259
HMMPanther GLUTAMINE SYNTHETASE 4.2e-259

See the detailed result >

AT1G66200.1

Model type
Protein coding
Short Description
glutamine synthase clone F11
Curator Summary
encodes a cytosolic glutamate synthetase, this enzyme has low affinity with substrate ammonium
Computational Description
glutamine synthase clone F11 (GSR2); FUNCTIONS IN: glutamate-ammonia ligase activity, copper ion binding; INVOLVED IN: nitrate assimilation, response to fructose stimulus, response to salt stress, response to sucrose stimulus, response to glucose stimulus; LOCATED IN: cytosol, cytosolic ribosome, apoplast, vacuole, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine synthetase, catalytic domain (InterPro:IPR008146), Glutamine synthetase, beta-Grasp (InterPro:IPR008147), Glutamine synthetase/guanido kinase, catalytic domain (InterPro:IPR014746); BEST Arabidopsis thaliana protein match is: glutamine synthase clone R1 (TAIR:AT5G37600.1); Has 11094 Blast hits to 11090 proteins in 3405 species: Archae - 162; Bacteria - 5924; Metazoa - 440; Fungi - 257; Plants - 1757; Viruses - 3; Other Eukaryotes - 2551 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-14-N11 introduced

  • F01002 - Specific phenotypes were NOT observed.
  • F01807 - Specific phenotypes were NOT observed.
  • F01920 - Specific phenotypes were NOT observed.
  • F03716 - Specific phenotypes were NOT observed.
  • F03935 - Specific phenotypes were NOT observed.
  • F05438 - Specific phenotypes were NOT observed.
  • F06323 - Specific phenotypes were NOT observed.
  • F08015 - Specific phenotypes were NOT observed.
  • F09405 - Specific phenotypes were NOT observed.
  • F10743 - Specific phenotypes were NOT observed.
  • F11236 - rosette leaf::increased width / rosette leaf::decreased width / rosette leaf::present in fewer numbers in organism / cauline leaf::decreased size / whole plant::decreased height / petal::abnormal
  • F13908 - Specific phenotypes were NOT observed.
  • F14330 - Specific phenotypes were NOT observed.
  • F14609 - Specific phenotypes were NOT observed.
  • F16212 - seed::increased size / seed::increased length
  • F17728 - seed::increased size / seed::increased length
  • F18718 - Specific phenotypes were NOT observed.
  • F19021 - Specific phenotypes were NOT observed.
  • F19601 - Specific phenotypes were NOT observed.
  • F19906 - seed::increased size / seed::increased length
  • F20345 - Specific phenotypes were NOT observed.
  • F22028 - Specific phenotypes were NOT observed.
  • F23503 - Specific phenotypes were NOT observed.
  • F24140 - Specific phenotypes were NOT observed.
  • F26417 - seed::increased length
  • F29003 - Specific phenotypes were NOT observed.
  • F29515 - Specific phenotypes were NOT observed.
  • F29835 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

30 mutant lines found