1. Home
  2. Full-length cDNAs
  3. RAFL05-14-N22

RAFL05-14-N22

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07317)

full reading [+] show sequence

Nucleotide sequence: RAFL05-14-N22 - full reading 
AACGCCCACA ACGAAAAGGA ACTTCTCTTT TTGTTTGGTG ACTGAATCGG 
TGGAAAACAA CACAAGTTTG TTCCTTTTTG TCTCTCCAGA TCCCTTGGCT 
TCCTTCTTCT TCTTCATCCT CCTCGTGAGA CTCTGTGTTG AAATTTCTCT 
AGGGTTTTAA TTATCGGCGT TGGTTTTTCG TTTTTGAGAA TTTGATTTCG 
TTTTTAGAAA TAATGGGTGA TTGGGCTCAA CTTGCTCAGT CTGTGATCCT 
AGGTTTGATT TTCTCTTACC TTCTCGCTAA GCTGATCTCG ATCGTCGTCA 
CGTTTAAAGA AGACAATCTC TCTCTTACTC GTCACCCAGA GGAGTCTCAA 
TTGGAAATTA AACCGGAAGG AGTTGACTCG CGACGTCTCG ATTCCTCTTG 
CGGTGGTTTC GGTGGTGAGG CGGATTCGCT TGTGGCGGAG CAGGGTAGCT 
CCCGAAGTGA TAGCGTTGCC GGTGACGACA GTGAGGAAGA TGATGATTGG 
GAAGGCGTCG AGAGCACGGA ACTCGATGAG GCTTTTAGCG CCGCCACTCT 
TTTTGTGACT ACCGCCGCCG CAGATCGGCT TTCGCAGAAG GTACCGAGTG 
ATGTGCAGCA GCAGCTTTAC GGATTGTATA AGATTGCTAC GGAAGGGCCG 
TGTACTGCTC CTCAGCCATC AGCTCTCAAA ATGACTGCTC GTGCCAAGTG 
GCAAGCATGG CAGAAACTGG GAGCTATGCC ACCTGAAGAG GCGATGGAGA 
AGTATATTGA GATTGTCACT CAGCTTTACC CAACTTGGTT AGACGGTGGC 
GTGAAAGCCG GAAGTCGGGG TGGGGATGAT GCAGCCTCCA ACTCAAGAGG 
AACCATGGGA CCAGTTTTTA GCTCTTTGGT TTATGATGAG GAGTCCGAAA 
ATGAGTTGAA GATTGATGCC ATACACGGAT TTGCTAGAGA AGGAGAAGTC 
GAGAATTTAC TGAAAAGCAT TGAAAGCGGC ATTCCTGTAA ATGCAAGGGA 
CAGTGAAGGT CGCACACCAT TGCACTGGGC TATAGACCGT GGCCACCTCA 
ACATCGCCAA AGTTCTGGTC GATAAGAACG CCGATGTGAA TGCTAAGGAC 
AACGAAGGCC AAACCCCTTT GCATTATGCT GTTGTATGCG ACAGAGAAGC 
TATCGCCGAG TTTCTGGTTA AACAGAACGC AAACACAGCC GCTAAAGATG 
AGGATGGAAA CTCTCCCCTT GATCTCTGTG AATCAGACTG GCCCTGGATC 
CGAGATTCTG CAAAGCAGGC AGACTAAACA AATACTAACC ACGTCTTCTC 
TAAATCCGCA ATGTATATGA TCAAATGACT TAGTAAGAAG CTTTTCTTTA 
CTTTAAACTT TCTTTCCATC CCTACCACAT CACTGGGATG TTCCAACACT 
ATATCACTTG GATGTTACCA AGTCTTGTTC TTTGATTTCT TTCTTCTTAC 
ATTTTAACAA TCTTTTGTTC CTTTAGGCTT TATGATATGT CGT

Gene models with high sequence identity

  1. AT4G27780.1 [+] show detail - acyl-CoA binding protein 2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Acyl-CoA-binding protein, ACBP 8.3e-25
HMMPfam Ankyrin repeat 2.3e-11
HMMPfam Ankyrin repeat 4.7e-07
superfamily Ankyrin repeat-containing domain 5.9e-33
superfamily Acyl-CoA-binding protein, ACBP 1e-25
Gene3D FERM/acyl-CoA-binding protein, 3-helical bundle 2.5e-22
Gene3D Ankyrin repeat-containing domain 4.2e-29
FPrintScan Acyl-CoA-binding protein, ACBP 4.3e-07
FPrintScan Acyl-CoA-binding protein, ACBP 4.3e-07
FPrintScan Acyl-CoA-binding protein, ACBP 4.3e-07
FPrintScan Ankyrin repeat, sub-type 9e-05
FPrintScan Ankyrin repeat, sub-type 9e-05
HMMPanther ACYL-COENZYME A BINDING DOMAIN CONTAINING 6 9.7e-28
HMMPanther ANKYRIN REPEAT-CONTAINING 9.7e-28
ProfileScan Ankyrin repeat 15.654
ProfileScan Ankyrin repeat 11.808
ProfileScan Ankyrin repeat-containing domain 31.935
ProfileScan Acyl-CoA-binding protein, ACBP 37.952
HMMSmart Ankyrin repeat 4.5e-08
HMMSmart Ankyrin repeat 0.005

See the detailed result >

AT4G27780.1

Model type
Protein coding
Short Description
acyl-CoA binding protein 2
Curator Summary
Encodes acyl-CoA-binding protein with ankyrin repeats
Computational Description
acyl-CoA binding protein 2 (ACBP2); CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Acyl-CoA-binding protein, ACBP (InterPro:IPR000582), FERM/acyl-CoA-binding protein, 3-helical bundle (InterPro:IPR014352), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: acyl-CoA binding protein 1 (TAIR:AT5G53470.1); Has 90208 Blast hits to 29988 proteins in 1366 species: Archae - 152; Bacteria - 8068; Metazoa - 46498; Fungi - 7104; Plants - 3511; Viruses - 860; Other Eukaryotes - 24015 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-14-N22 introduced

  • F02233 - Specific phenotypes were NOT observed.
  • F15812 - Specific phenotypes were NOT observed.
  • F19710 - seed::increased size / seed::increased length
  • F19907 - seed::increased size / seed::increased length
  • F21109 - seed::increased size / seed::increased length
  • F24401 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found