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  3. RAFL05-15-A10

RAFL05-15-A10

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07321)

full reading [+] show sequence

Nucleotide sequence: RAFL05-15-A10 - full reading 
GCTCTCACTC CCAAAACGAT GTCGTCTCTA TCTCGCGTTC TCCGTGGCAC 
CTTCAACACT TGCCCGATCC GCCGTTTTTC CTCCGCCGCC ACCGTAGTCT 
CCGAACCCAC CGCAGTCACT GCCGCAATCT CGCCTCCTCA AAAGTCACTA 
ACCAGTCTCG TGAATGGCGA ACGAAACCCC AAACGGATCG TGGAGAAATT 
CAAGAAGGCA TGTGAGTCGG AGCGGTTCCG GACCAACATA GCCGTGTACG 
ATAGAACCGT GCGCCGTCTC GTAGCCGCAA AGAGATTACA CTATGTCGAA 
GAGATTTTGG AGGAGCAGAA GAAGTACCGC GACATGTCAA AAGAGGGATT 
CGCGGCGAGG ATCATTTCTC TGTATGGAAA AGCCGGCATG TTTGAAAATG 
CACAGAAGGT GTTCGAAGAA ATGCCAAACA GAGACTGCAA GAGGTCAGTG 
TTGTCCTTCA ATGCCTTGCT TAGTGCATAT AGACTTTCCA AGAAATTCGA 
TGTGGTTGAA GAACTTTTCA ATGAGTTACC TGGAAAGTTA TCAATCAAAC 
CAGATATTGT ATCTTACAAT ACTTTGATTA AGGCATTGTG TGAGAAGGAT 
TCTTTACCTG AAGCTGTTGC ATTGCTTGAT GAGATTGAGA ACAAGGGACT 
AAAACCTGAT ATAGTTACAT TCAACACACT TTTACTGTCT TCGTATCTAA 
AGGGACAGTT TGAGCTAGGG GAAGAGATAT GGGCTAAAAT GGTGGAGAAG 
AATGTAGCAA TAGACATCAG GACTTACAAT GCTAGGCTGC TTGGATTAGC 
CAATGAGGCG AAATCGAAAG AGCTAGTAAA TCTCTTTGGA GAACTTAAGG 
CTAGTGGTCT CAAACCTGAT GTTTTCAGTT TCAATGCTAT GATTAGAGGA 
TCTATCAACG AAGGAAAAAT GGACGAAGCT GAAGCGTGGT ACAAAGAAAT 
TGTGAAGCAT GGTTATCGTC CTGATAAAGC TACCTTTGCT TTATTGCTTC 
CTGCTATGTG TAAAGCAGGT GACTTTGAGT CTGCGATTGA GCTCTTCAAG 
GAGACATTCA GTAAGCGGTA TCTTGTCGGT CAAACAACGT TGCAGCAGTT 
AGTTGATGAA TTGGTGAAAG GGTCTAAGAG AGAAGAAGCT GAGGAGATTG 
TGAAGATTGC AAAGACCAAT GATTTCTTAA AGTTGAAGCT AAATTTGCCG 
TCCCAGGAAG AGTAAGTCAT TTGCTACTCT CTCACTAAGT GTCTCGTTGA 
ATTGTGTCTG AGCAGCTTAA GCTATATGTA TTTGCTGGTG TTGCTTTGTG 
GCTTTTCTAC TTCTCTAAAC TTTCCTCTGT GGAAGTAAGA CTTGTTTCTT 
TCTATGTAGT TTCGCTTATT TCACTGGTGC AAAAAACAGC ATGTAGTCGA 
GGTTTAGGCA GAAGAAACCC TACAAATTTA ATAAATTTTG GTTATTTGTT 
TAAAAAAAAA AAAAAAG

Gene models with high sequence identity

  1. AT1G55890.1 [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
    E-value: 0; Score: 99.93

 

InterPro Scan Digest

Program Description E-value
ProfileScan Pentatricopeptide repeat 8.068
ProfileScan Pentatricopeptide repeat 12.299
ProfileScan Pentatricopeptide repeat 7.289
ProfileScan Pentatricopeptide repeat 8.627
ProfileScan Pentatricopeptide repeat 9.493
ProfileScan Pentatricopeptide repeat 11.981
ProfileScan Pentatricopeptide repeat 9.229
HMMTigr Pentatricopeptide repeat 0.11
HMMTigr Pentatricopeptide repeat 0.0074
HMMTigr Pentatricopeptide repeat 5.4e-08
HMMTigr Pentatricopeptide repeat 0.0082
HMMTigr Pentatricopeptide repeat 0.0011
HMMTigr Pentatricopeptide repeat 5e-07
HMMTigr Pentatricopeptide repeat 0.022
HMMPfam Pentatricopeptide repeat 0.00013
HMMPfam Pentatricopeptide repeat 0.051
HMMPfam Pentatricopeptide repeat 9.3e-06
HMMPfam Pentatricopeptide repeat 0.21
HMMPfam Pentatricopeptide repeat 1.8e-05
HMMPfam Pentatricopeptide repeat 0.02
HMMPanther PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 6.1e-90
superfamily TPR-like 5.8e-17

See the detailed result >

AT1G55890.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G13160.1); Has 41765 Blast hits to 13385 proteins in 277 species: Archae - 5; Bacteria - 48; Metazoa - 331; Fungi - 377; Plants - 39933; Viruses - 0; Other Eukaryotes - 1071 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-15-A10 introduced

  • F17806 - Specific phenotypes were NOT observed.
  • F22341 - Specific phenotypes were NOT observed.
  • F23206 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

10 mutant lines found