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  3. RAFL05-15-C04

RAFL05-15-C04

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17088)

full reading [+] show sequence

Nucleotide sequence: RAFL05-15-C04 - full reading 
CCGACCAACA CAAAAAAAAA ACCAAGAACA AAAAACAATT AAACAATATG 
GCATTTCTTC TGAGTTTTTT GATACTAGCG TTTCTTATAA CCATCATCTT 
CTTTTTATCT TCATCTTCAA CTAAAAAAGT CCAAGAAAAC ACCACATATG 
GACCACCATC GTATCCACTC ATTGGCTCCA TACTCTCTTT CAACAAAAAC 
CGTCATCGTC TTCTTCAATG GTACACCGAG CTTCTCCGTC TCTCTCCGTC 
TCAAACCATC TTAGTTCCTC TCCTCGGCAA CCGTCGCACC ATCATCACAA 
CAAACCCATT AAACGTCGAG TACATTCTCA AAACAAACTT CTTTAACTTC 
CCTAAAGGTA AACCTTTTAC TGATCTTCTT GGTGATCTTC TCGGTGGAGG 
CATATTCAAT GTCGACGGTC ACTCATGGAG CTCGCAGCGC AAACTCGCTA 
GCCACGAGTT CTCCACTCGC TCGCTTAGGA GTTTTGCTTT TGAGGTTCTT 
AAAGACGAAG TGGAGAACCG TCTAGTCCCG GTTTTATCCA CGGCGGCTGA 
TGTTGGTACG ACCGTGGATT TGCAAGATGT TTTGAAACGT TTTGCTTTTG 
ATGTTGTTTG TAAAGTCTCG TTGGGTTGGG ATCCGGATTG TTTGGATCTA 
ACCCGACCCG TTAATCCACT TGTGGAGGCT TTTGACACCG CTGCTGAGAT 
TAGTGCTCGC CGTGCCACGG AGCCTATTTA CGCTGTTTGG AAAACGAAGC 
GTGTGTTGAA CGTGGGAAGC GAGAGGAAGC TTAGGGAAGC GATCAGGACC 
GTGCACGTGT TGGTCTCTGA GATTGTCAGA GCTAAGAAGA AGAGTCTTGA 
GATCGGAACC GGAGCAGAAG CAAAGCAAGA TCTTTTGTCG AGGTTTCTAG 
CCGCCGGCCA CAACGGCGAA GCAGTGAGGG ACATGGTTAT TAGTTTTATC 
ATGGCGGGAA GAGATACAAC GTCAGCAGCG ATGACGTGGC TGTTTTGGTT 
GTTGACTGAG AACGATGACG TGGAGCGGAA GATTTTAGAA GAAGTGGACC 
CGTTGGTGAG TTTAGGGTTA GGGTTTGAGG ATTTGAAAGA GATGGCTTAC 
ACGAAGGCTT GTCTATGTGA AGCCATGAGG CTATATCCTC CAGTTTCGTG 
GGACTCTAAA CATGCTGCAA ACGACGACGT TTTGCCTGAT GGGACACGTG 
TCAAGAGAGG AGACAAAGTG ACCTATTTCC CATACGGTAT GGGGAGGATG 
GAGACGCTAT GGGGTACGGA TTCAGAAGAG TTTAACCCGA ACCGGTGGTT 
TGATTCTGAA CCGGGGAGTA CACGACCGGT TTTGAAACCT ATTAGTCCCT 
ACAAATTTCC GGTTTTTCAA GCCGGGCCGA GGGTTTGTGT AGGGAAAGAG 
ATGGCATTTA TGCAGATGAA ATACGTCGTT GGTTCTGTTT TGAGTCGGTT 
TGAGATTGTG CCGGTTAACA AAGACCGGCC GGTTTTTGTT CCTCTTTTAA 
CGGCTCATAT GGCTGGTGGG CTTAAGGTGA AGATCAAGAG AAGAAGTCAC 
ATCCTTAACA ACGTTTAATA GAATATGTAA AAACGAGTTA TTTATATATA 
GAATATCAGT GTGGCAATAC TCCTGCCTGC GAAACCAAAA AAAAAA

Gene models with high sequence identity

  1. AT3G48520.1 [+] show detail - cytochrome P450, family 94, subfamily B, polypeptide 3
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Cytochrome P450 3.6e-97
Gene3D Cytochrome P450 7.3e-93
FPrintScan Cytochrome P450, E-class, group I 1e-11
FPrintScan Cytochrome P450, E-class, group I 1e-11
FPrintScan Cytochrome P450, E-class, group I 1e-11
FPrintScan Cytochrome P450, E-class, group I 1e-11
FPrintScan Cytochrome P450, C-terminal 3.1e-10
FPrintScan Cytochrome P450, C-terminal 3.1e-10
FPrintScan Cytochrome P450, C-terminal 3.1e-10
FPrintScan Cytochrome P450, C-terminal 3.1e-10
HMMPfam Cytochrome P450 5.3e-64
HMMPanther CYTOCHROME P450, SUBFAMILY 86A, B 4.5e-221
HMMPanther Cytochrome P450 4.5e-221

See the detailed result >

AT3G48520.1

Model type
Protein coding
Short Description
cytochrome P450, family 94, subfamily B, polypeptide 3
Curator Summary
member of CYP94B
Computational Description
"cytochrome P450, family 94, subfamily B, polypeptide 3" (CYP94B3); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 94, subfamily B, polypeptide 1 (TAIR:AT5G63450.1); Has 27655 Blast hits to 27536 proteins in 1435 species: Archae - 44; Bacteria - 2616; Metazoa - 10459; Fungi - 5693; Plants - 7745; Viruses - 3; Other Eukaryotes - 1095 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-15-C04 introduced

  • F21327 - Specific phenotypes were NOT observed.
  • F29831 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found