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RAFL05-15-D05

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01304)

full reading [+] show sequence

Nucleotide sequence: RAFL05-15-D05 - full reading 
ATCAAACCTC AACAAAAATA CTCTCTCTTA TTTCAGACTT TTCAGACAAA 
AACAGAGAGA AACTTTTTGT GTTTATGTGT TTTAAGATCT GATTGATAAA 
AAAGATGCAA GTTATTTCTC CTTCGTCTCC GGCGCCGAGA TTCGCCGGAA 
AAGAGAGATT TTCAGAAGTT TACGGCGAAC TAAACGACGA TTTTGGCTCT 
AAACTGAAGA TTAGTTCTAA AGAGGAAGAA AACAGAGATG ATGATTCATG 
GTGGAATCAG AACGGAACTG ATAAAGATGA TGAAGGAAGA GAAGAAGATT 
TCTCATTCGC AAGTGTAAAC GCAGATAATT CACCGATAAC CGCAGATGAA 
GCATTCGAAG ACGGTCAGAT CCGACCGGTT TATCCTCTGT TTAACCGGAA 
TATTTTCTTC GATGATCCAG AGGAAAAAAC TTTACGTTCA CCTCTCAAGA 
AACTCTTCGT TGAATCCACA ACCACAGAAG AAGAAGAAGA AGAGTCAGAT 
ACGGTGGGTC CATATTGTTC ATGGACAAAT CGTACGGTGG AGCAAGCATC 
ACCAGAGACT TGTCGGAAAA GTAACTCAAC AGGGTTCTCA AAGCTATGGA 
GATTTAGAGA TCTTGTTTTG AGAAGTAACA GTGATGGAAA AGATGCGTTT 
GTGTTTTTAA GCAACGGCTC TTCATCTACA TCGTCGACGT CGTCTACGGC 
GGCGAGATTG AGTGGTGTGG TGAAGTCGTC GGAGAAAGGG AAAGAGAAAA 
CGAAGACGGA TAAGAAGAAG GATAAGATGA GAACGAAATC GGCACATGAG 
AAATTGTATA TGAGAAACAG AGCAATGAGA GAAGAAGGGA AACGAAGATC 
GTATCTTCCG TATAAACATG TTGGGTTCTT CACTAATGTT AATGGTTTAA 
CCAGAAATGT TCATCCCTAT TGATTAAACC GATCTGTCGT ACCAAAATCT 
CTACCGACAA ATCTTTGCCT TTTGTATATA TCTAACCTTT TTTTTGGTTT 
CTGTGTATTA TAAAACCTTC TTTTTGTAAG TAAAAGTGAA ACTTTACTTA 
TTAACTTTTC GTTTGTATCA TTTGATTAGT TTTTTTTCTT CTTTGATGTA 
AAGTATTTTT TGATTTTGAA AGTAGTAGAG AAAAGATTCA CC

Gene models with high sequence identity

  1. AT1G70420.1 [+] show detail - Protein of unknown function (DUF1645)
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

See the detailed result >

AT1G70420.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF1645)
Computational Description
Protein of unknown function (DUF1645); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1645 (InterPro:IPR012442); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1645) (TAIR:AT1G23710.1); Has 179 Blast hits to 179 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 162; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-15-D05 introduced

  • F16446 - rosette leaf::abnormal / stem::increased thickness / cauline leaf::coiled / rosette leaf::increased width / rosette leaf::present in greater numbers in organism / rosette leaf::abnormal / stem::abnormal / whole plant::decreased height / stem internode::decreased length
  • F26608 - Specific phenotypes were NOT observed.
  • F27310 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found