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RAFL05-15-D11

RIKEN Arabidopsis Full-length cDNAs

Resource: (pdz87491)

5 prime EST [+] show sequence

Nucleotide sequence: RAFL05-15-D11 - 5 prime EST 
TAAACCAAAA TCCTCAAAAG CCTATTTGGG GGATCATCAA CCTTCTATCA 
TCACCATGGA TCCTTACAAG TATCGTCCTT CAAGCGCGTA CAACGCCCCA 
TTCTACACCA CAAACGGTGG TGCTCCAGTC TCCAACAACA TCTCTTCCCT 
CACCATCGGA GAAAGAGGTC CGGTTCTTCT TGAGGATTAT CATTTGATCG 
AGAAGGTTGC TAATTTCACC AGAGAGAGGA TCCCTGAGAG AGTGGTTCAT 
GCTAGAGGAA TCAGTGCTAA GGGTTTCTTT GAAGTCACCC ATGACATTTC 
AAACCTCACT TGTGCTGATT TTCTCAGAGC CCCTGGTGTT CAAACTCCGG 
TTATTGTCCG TTTCTCCACC GTTGTCCACG AACGTGCCAG TCCTGAAACC 
ATGAGGGATA TTCGTGGTTT TGCTGTCAAG TTTTACACCA GAGAGGGAAA 
CTTTGATCTT GTTGGGAACA ACACTCCGGT GTTCTTCATC CGTGATGGGA 
TTCAGTTCCC GGATGTTGTC CACGCGTTGA AACCTAACCC GAAAACAAAC 
ATCCAAGAGT ACTGGAGGAT TCTGGACTAC ATGTCCCACT TGCCTGAGAG 
TTTGCTCACA TGGTGCTGGA TGTTTGATGA TGTTGGTATT CCACAAGATT 
ACAGGCACAT GGAGGGTTC

Gene models with high sequence identity

  1. AT1G20620.5 [+] show detail - catalase 3
    E-value: 0; Score: 100.00

3 prime EST [+] show sequence

Nucleotide sequence: RAFL05-15-D11 - 3 prime EST 
GCTGCTTCAA GAAACATTGA TTTATTGTAA AAAGAGATTA CAAAGACAGT 
GAGAGTAGAA AGGAAGGAAA CATGAGTTTT TGGGATTACA AGCATTATTA 
TTATATAGAC AAGAAACAAC AACACATGTG ATTATCTTTT TGACGGATTT 
AACGACCAAG CGATGATAGA TCGATGAGAT TGATTGTACC TCACATAGAC 
TGAGCTTATA TGGAGATTGG CCTCTAGATG CTTGGCCTCA CGTTCAGACG 
GCTTGCAAGT TTCTGTCCCA AGGATCGATC AGCCTGAGAC CAGTAAGAGA 
TCCAGATGCC GCGGATCTCG TGGGTGAGAC GTGGCTCCGA TAGAATCTCC 
ACCCATCTCT TAACAAACCT GTCTTGCCTG TCTGGTGCCC ATGATCTGTA 
CCTGTCTCCA GCCTGTTTGA AGTTGTTCTC TTTCTTGATG ACGCACTTTG 
TTCGAATTCC AGTGTAGGAG TTTGTAGGGG TGGGAACTTT CTCAGCGCAG 
CGGACAGGAT CAAACTTTGA GGGGTAGTAA TTGATCTCCT CATCTCTGTG 
CATGAAGTTC ATAAAACCTT CATGGTGATT GTTGTGGTGA GCACATTTGG 
GAGCATTGAC TGGAAGCTGC AAATAATTCG GTCCAAGGCG ATGTCTCTGA 
GTGTCACCAT AAGCAAAGAT CCTACACTGG AGCAGCTTGT CGTCTGAGTA 
GT

Gene models with high sequence identity

  1. AT1G20620.4 [+] show detail - catalase 3
    E-value: 0; Score: 100.00

AT1G20620.4

Model type
Protein coding
Short Description
catalase 3
Curator Summary
Catalase, catalyzes the breakdown of hydrogen peroxide (H2O2) into water and oxygen.
Computational Description
catalase 3 (CAT3); FUNCTIONS IN: catalase activity, cobalt ion binding; INVOLVED IN: in 7 processes; LOCATED IN: in 9 components; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Catalase-like domain, haem-dependent (InterPro:IPR020835), Catalase related subgroup (InterPro:IPR018028), Catalase (InterPro:IPR002226), Catalase, N-terminal (InterPro:IPR011614), Catalase-related immune responsive (InterPro:IPR010582); BEST Arabidopsis thaliana protein match is: catalase 1 (TAIR:AT1G20630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G20620.5

Model type
Protein coding
Short Description
catalase 3
Curator Summary
Catalase, catalyzes the breakdown of hydrogen peroxide (H2O2) into water and oxygen.
Computational Description
catalase 3 (CAT3); FUNCTIONS IN: catalase activity, cobalt ion binding; INVOLVED IN: in 7 processes; LOCATED IN: in 9 components; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Catalase-like domain, haem-dependent (InterPro:IPR020835), Catalase related subgroup (InterPro:IPR018028), Catalase (InterPro:IPR002226), Catalase, N-terminal (InterPro:IPR011614), Catalase-related immune responsive (InterPro:IPR010582); BEST Arabidopsis thaliana protein match is: catalase 2 (TAIR:AT4G35090.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-15-D11 introduced

  • F03409 - Specific phenotypes were NOT observed.
  • F05407 - seed::increased size / seed::increased length
  • F05719 - Specific phenotypes were NOT observed.
  • F06206 - seed::increased size
  • F07211 - Specific phenotypes were NOT observed.
  • F08117 - Specific phenotypes were NOT observed.
  • F09226 - Specific phenotypes were NOT observed.
  • F09748 - Specific phenotypes were NOT observed.
  • F10334 - Specific phenotypes were NOT observed.
  • F20125 - Specific phenotypes were NOT observed.
  • F20337 - Specific phenotypes were NOT observed.
  • F21029 - Specific phenotypes were NOT observed.
  • F23113 - Specific phenotypes were NOT observed.
  • F24620 - Specific phenotypes were NOT observed.
  • F27702 - Specific phenotypes were NOT observed.
  • F28506 - Specific phenotypes were NOT observed.
  • F28813 - Specific phenotypes were NOT observed.
  • F29050 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

24 mutant lines found