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RAFL05-15-D21

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02633)

full reading [+] show sequence

Nucleotide sequence: RAFL05-15-D21 - full reading 
AATTTCTTCG CTCCCTTTCT TCTTCTTCTC TCCTTCTTTG AATTTTGATT 
TTGGTTGAAT GGAGATATCA GAGAGAGTTC GAGCTCGATT AGCTGTTCTC 
TCAGGTCATT TATCGGAAGG AAAACAGGAT TCTCCAGCGA TCGAGCGATG 
GTGCACGTCG GCGGATACGA GTGTCGCACC GCTTGGATCT TTGAAGGGAA 
CACTGACGAT CGTCGACGAA CGCACCGGAA AAAATTATAA AGTTCCGGTC 
TCAGATGATG GTACCGTTAA AGCCGTTGAT TTCAAAAAGA TAGTGACGGG 
GAAGGAAGAC AAGGGGCTTA AGTTATACGA TCCAGGTTAC TTGAACACGG 
CTCCTGTTCG ATCTTCGATT TCTTACATCG ATGGAGATGA AGGGATCCTT 
CGTTACCGTG GCTACCCAAT TGAGGAAATG GCTGAGAACA GTACTTTTCT 
GGAGGTGGCT TATCTTCTCA TGTATGGGAA TCTGCCCTCT GAAAGTCAGC 
TATCTGATTG GGAGTTTGCA GTTTCTCAGC ATTCAGCTGT GCCACAAGGT 
GTATTAGATA TTATACAGTC TATGCCTCAT GATGCACACC CAATGGGAGT 
TCTTGTGAGT GCAATGAGTG CGCTTTCCAT CTTTCATCCT GATGCTAATC 
CTGCTCTTAG GGGCCAGGAT ATTTACGATT CAAAACAAGT TAGAGATAAA 
CAAATTATCC GCATTATTGG AAAGGCACCA ACAATTGCAG CAGCTGCTTA 
TCTGAGGATG GCAGGAAGGC CTCCTGTTCT TCCTTCAGGA AACCTTCCTT 
ATGCAGATAA TTTCCTCTAT ATGCTTGATT CCCTGGGAAA TAGATCCTAC 
AAACCTAATC CTCGGCTGGC TCGGGTGTTG GACATCCTCT TCATACTGCA 
TGCAGAGCAT GAAATGAACT GCTCCACCGC TGCTGCTCGG CATCTTGCCT 
CTAGCGGTGT TGATGTCTAC ACTGCTGTTG CTGGAGCTGT GGGAGCGCTT 
TATGGTCCAC TTCATGGTGG TGCAAACGAG GCTGTGCTTA AGATGTTGTC 
AGAGATTGGG ACTGTTGAAA ATATTCCAGA GTTCATTGAG GGTGTGAAGA 
ACAGGAAGAG GAAGATGTCT GGTTTTGGAC ACCGTGTGTA CAAAAACTAT 
GACCCTCGAG CTAAAGTCAT CAAGAACCTG GCTGATGAAG TATTTTCCAT 
TGTTGGAAAG GATCCTCTAA TTGAGGTTGC TGTTGCACTT GAGAAGGCAG 
CTCTCTCTGA CGATTACTTT GTTAAGAGAA AGCTGTATCC AAATGTTGAC 
TTCTACTCTG GATTAATATA CAGGGCAATG GGATTTCCAC CGGAGTTCTT 
CACGGTCTTA TTCGCGATTC CTCGCATGGC TGGATACTTG TCACATTGGA 
AAGAGTCACT GGATGATCCT GACACCAAGA TCATGAGACC ACAACAGGTG 
TACACAGGCG TGTGGCTGAG GCATTACACA CCAGTGAGAG AGAGAATAGT 
GACGGATGAC TCGAAAGAGT CAGACAAATT GGGTCAAGTC GCGACTTCAA 
ATGCATCAAG AAGACGTTTG GCTGGATCTT CAGTTTAGAC GTAGGCCCTT 
TTAGGGTCCA TACTATACAT CAAACCACAC CGCAAAGAAT AAAAGAGATT 
GGTTTCTCTA GCCTAAAGCT AAGATACTTG ATCATACTCG AAACTTAGAT 
TTCTCATTTT GTAGGCACAA TATAGACTTG ATCTATATTT GCTTCAATCC 
ATCTTCTAAG GGTGTTTGTC CGCCTTGTTT GTCTTCTTAT CAGAACGTGT 
TTATTGTATA AAATGATTTA TGG

Gene models with high sequence identity

  1. AT2G42790.1 [+] show detail - citrate synthase 3
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D Citrate synthase-like, large alpha subdomain 2.2e-92
HMMPfam Citrate synthase-like 1.2e-128
HMMTigr Citrate synthase, type II 3e-157
HMMPanther Citrate synthase-like 5.4e-191
superfamily Citrate synthase-like, core 4.6e-143
FPrintScan Citrate synthase-like 1.4e-46
FPrintScan Citrate synthase-like 1.4e-46
FPrintScan Citrate synthase-like 1.4e-46
FPrintScan Citrate synthase-like 1.4e-46
FPrintScan Citrate synthase-like 1.4e-46
FPrintScan Citrate synthase-like 1.4e-46
PatternScan Citrate synthase active site 0

See the detailed result >

AT2G42790.1

Model type
Protein coding
Short Description
citrate synthase 3
Curator Summary
Encodes a peroxisomal citrate synthase that is expressed throughout seedling and shoot development.
Computational Description
citrate synthase 3 (CSY3); FUNCTIONS IN: citrate (SI)-synthase activity; INVOLVED IN: fatty acid beta-oxidation, tricarboxylic acid cycle; LOCATED IN: peroxisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Citrate synthase-like, large alpha subdomain (InterPro:IPR016142), Citrate synthase, type II (InterPro:IPR010953), Citrate synthase-like (InterPro:IPR002020), Citrate synthase-like, core (InterPro:IPR016141), Citrate synthase active site (InterPro:IPR019810); BEST Arabidopsis thaliana protein match is: citrate synthase 2 (TAIR:AT3G58750.1); Has 13520 Blast hits to 13518 proteins in 3201 species: Archae - 174; Bacteria - 8544; Metazoa - 357; Fungi - 325; Plants - 176; Viruses - 0; Other Eukaryotes - 3944 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-15-D21 introduced

  • F01804 - Specific phenotypes were NOT observed.
  • F06828 - Specific phenotypes were NOT observed.
  • F18633 - rosette leaf::decreased size / rosette leaf::present in fewer numbers in organism / stem::decreased thickness / whole plant::decreased height / stem::abnormal / stem::abnormal / stem::abnormal

Mutant lines with disrupted or induced

4 mutant lines found