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RAFL05-15-F12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02640)

full reading [+] show sequence

Nucleotide sequence: RAFL05-15-F12 - full reading 
ACTCGTACAA CAATGGCGTC GATGGCTGCA ACCACCAATT TCACCAAATC 
TATGCTCTTT CCATTCTCTC ATGTTTCAGG AAATGCGAGC TTGAATTCGC 
AGAGAAGAAC ATGGCCAAAG CAGTACAAGT CTAAAAATGG TTACAGGTCT 
CTTCGAGTGA ATGGATTATT TGGAGGTGGA AACAAAGATA ATAACAGTGA 
AGATGGACAA TCAAAGGCAG GAATATTTGG TAATATGCAG AATATGTATG 
AGACTGTGAA GAAAGCTCAA ATGGTTGTTC AAGTGGAAGC TGTACGTGTT 
CAAAAAGAGT TAGCTGCCGC AGAATTTGAT GGTTATTGTG CAGGCGAGCT 
TGTCAAGGTT ACGTTATCAG GTAACCAGCA ACCAATCCGT ACTGATATTA 
CCGAGGCAGC AATGGAACTA GGTTCCGAAA AACTATCACA ACTTGTCACA 
GAAGCATACA AGGACGCACA CGCCAAGAGT GTGGTGGCTA TGAAAGAGAG 
AATGAGTGAC CTTGCGCAGA GCTTAGGAAT GCCACCGGGT CTCAGCGAAG 
GAATGAAGTA AGAAGCTGTT TTTGTTGTTT CATTTCAACT TTCAGGTATG 
AGAGGTTCGG CTTTTTTTGT TTGTTTGTAT ATCAGTCAGG CAGAAGCAAA 
GAGCTTTGTA CTCTACTCTT ATGGAATTAT ATATAAAAGA TTCG

Gene models with high sequence identity

  1. AT2G24020.1 [+] show detail - Uncharacterised BCR, YbaB family COG0718
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMTigr Uncharacterised protein family UPF0133 4.3e-16
Gene3D Uncharacterised protein family UPF0133 3.2e-21
superfamily Uncharacterised protein family UPF0133 1e-20
HMMPfam Uncharacterised protein family UPF0133 3.5e-19

See the detailed result >

AT2G24020.1

Model type
Protein coding
Short Description
Uncharacterised BCR, YbaB family COG0718
Computational Description
Uncharacterised BCR, YbaB family COG0718; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast stroma, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0133 (InterPro:IPR004401); BEST Arabidopsis thaliana protein match is: Uncharacterised BCR, YbaB family COG0718 (TAIR:AT4G30620.1); Has 2239 Blast hits to 2239 proteins in 898 species: Archae - 0; Bacteria - 1882; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 302 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-15-F12 introduced

  • F06140 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

6 mutant lines found