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RAFL05-15-F19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02641)

full reading [+] show sequence

Nucleotide sequence: RAFL05-15-F19 - full reading 
ACAATCTATC AACAGTTTTA AAAAAAGACA TAACTCAACC AATCTCACTT 
TGAAAAAGAC ATGAACAAAA CCCGCCTTCG TGCTCTCTCC CCACCTTCCG 
GTATGCAACA CCGTAAGAGA TGTCGATTGA GAGGTCGAAA CTACGTAAGG 
CCAGAAGTTA AACAACGCAA CTTCTCAAAA GATGAAGACG ATCTCATCCT 
CAAGCTTCAT GCACTTCTTG GCAATAGATG GTCATTGATA GCGGGAAGAT 
TGCCAGGACG AACCGACAAC GAAGTTAGGA TCCATTGGGA AACTTACCTA 
AAAAGGAAGC TCGTAAAAAT GGGAATCGAC CCAACCAATC ATCGTCTCCA 
CCATCACACC AACTACATTT CTAGACGTCA CCTCCATTCT TCACATAAGG 
AACATGAAAC CAAGATTATT AGTGATCAAT CTTCTTCGGT ATCCGAATCA 
TGTGGTGTAA CAATTTTGCC CATTCCAAGT ACCAATTGCT CGGAGGATAG 
TACTAGTACC GGACGAAGTC ATTTGCCTGA CCTAAACATT GGTCTCATCC 
CGGCCGTGAC TTCTTTGCCA GCTCTTTGCC TTCAGGACTC TAGCGAATCC 
TCTACCAATG GTTCAACAGG TCAAGAAACG CTTCTTCTAT TCCGATGAGA 
AATGGTGTAT TTGTTTGTAC ACATTTGTTA TATTACAAAT GCACATATTA 
TAATATTCG

Gene models with high sequence identity

  1. AT1G71030.1 [+] show detail - MYB-like 2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Myb, DNA-binding 4.2e-13
HMMSmart SANT, DNA-binding 5.2e-15
ProfileScan HTH transcriptional regulator, Myb-type, DNA-binding 24.468
HMMPanther Myb transcription factor 8.3e-40
superfamily Homeodomain-like 7.8e-16
Gene3D Homeodomain-related 9.5e-15

See the detailed result >

AT1G71030.1

Model type
Protein coding
Short Description
MYB-like 2
Curator Summary
Encodes a putative myb family transcription factor. In contrast to most other myb-like proteins its myb domain consists of a single repeat. A proline-rich region potentially involved in transactivation is found in the C-terminal part of the protein. Its transcript accumulates mainly in leaves.
Computational Description
MYB-like 2 (MYBL2); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 3 (TAIR:AT1G22640.1); Has 6938 Blast hits to 6802 proteins in 388 species: Archae - 0; Bacteria - 0; Metazoa - 361; Fungi - 142; Plants - 5491; Viruses - 3; Other Eukaryotes - 941 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-15-F19 introduced

  • F06635 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

1 mutant line founds