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RAFL05-15-H10

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17091)

full reading [+] show sequence

Nucleotide sequence: RAFL05-15-H10 - full reading 
GAATCGCTGG ACTCTGCTAC TGCGAAGAAC AACAAATTCC TTGTTTATCA 
TGGCGAATTC CGGCGAAGAG AAGTTGAAGC TCTACTCTTA CTGGAGAAGC 
TCGTGTGCTC ATCGTGTCCG TATCGCCCTC GCTTTGAAAG GGCTTGATTA 
TGAGTATATA CCAGTGAATT TGCTCAAGGG TGATCAATTC GATTCAGTTT 
ATCGTTTTGA TCTTCAAGAT TTCAAGAAGA TCAATCCAAT GGGAACTGTA 
CCAGCTCTGG TGGATGGAGA TGTTGTGATT AATGATTCTT TTGCGATAAT 
AATGTATCTG GATGAGAAGT ACCCTGAGCC ACCTTTGTTA CCTCGTGACC 
TCCATAAACG AGCTGTGAAT TACCAGGCAA TGAGTATTGT CTTGTCTGGC 
ATACAGCCTC ATCAAAATCT GGCTGTTATT AGGTATATCG AGGAAAAGAT 
AAATGTGGAG GAGAAGACTG CCTGGGTTAA TAATGCTATC ACAAAAGGAT 
TTACAGCTCT CGAGAAACTG TTGGTGAATT GCGCTGGGAA ACATGCGACT 
GGTGATGAAA TTTACCTGGC TGATCTCTTT CTAGCACCAC AGATCCACGG 
AGCAATCAAC AGATTCCAGA TTAACATGGA ACCGTACCCA ACTCTTGCAA 
AATGTTACGA ATCATACAAC GAACTGCCTG CGTTTCAAAA TGCACTACCG 
GAAAAGCAGC CAGATGCTCC TTCTTCCACC ATCTGATTCT GTGAACCCAT 
AAGCTACTCT CACTTTAATA AAACCTCAGA CAACAACAAC AACAACAATG 
ATAATAATAA TACCTTGTAC TCATACATGT ATCATATAAA CCAGTTACGT 
ATATTATACC ATCTCAATTG GAGGTATCTC ATAAGAGTTT CTCACTAAAA 
AAAAAA

Gene models with high sequence identity

  1. AT2G02390.3 [+] show detail - glutathione S-transferase zeta 1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Glutathione S-transferase, C-terminal-like 2e-32
superfamily Thioredoxin-like fold 2.5e-31
ProfileScan Glutathione S-transferase, N-terminal 30.67
ProfileScan Glutathione S-transferase/chloride channel, C-terminal 21.58
HMMPanther GLUTATHIONE-S-TRANSFERASE THETA, GST 2.9e-66
HMMPanther GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, 2.9e-66
HMMTigr Maleylacetoacetate isomerase 1.5e-105
HMMPfam Glutathione S-transferase, N-terminal 0.000000000000031
Gene3D Thioredoxin fold 4.6e-26
Gene3D Glutathione S-transferase, C-terminal-like 2.8e-44

See the detailed result >

AT2G02390.3

Model type
Protein coding
Short Description
glutathione S-transferase zeta 1
Curator Summary
Encodes glutathione transferase belonging to the zeta class of GSTs. Naming convention according to Wagner et al. (2002). The protein undergoes spontaneous thiolation following treatment with the oxidant tert-butylhydroperoxide.
Computational Description
glutathione S-transferase zeta 1 (GSTZ1); FUNCTIONS IN: glutathione transferase activity, catalytic activity; INVOLVED IN: toxin catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Maleylacetoacetate isomerase (InterPro:IPR005955), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutathione S-transferase (class zeta) 2 (TAIR:AT2G02380.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-15-H10 introduced

  • F21731 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found