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  3. RAFL05-15-H13

RAFL05-15-H13

RIKEN Arabidopsis Full-length cDNAs

Resource: (pdz87492)

5 prime EST [+] show sequence

Nucleotide sequence: RAFL05-15-H13 - 5 prime EST 
GAAATTCATC AAACCCATTT CTATTCCAAC TCCCAAAAAT GGCGATTCGT 
CTTCCTCTGA TCTGTCTTCT TGGTTCATTC ATGGTAGTGG CGATTGCGGC 
TGATTTAACA CCGGAGCGTT ATTGGAGCAC TGCTTTACCA AACACTCCCA 
TTCCCAACTC TCTCCATAAT CTTTTGACTT TCGGTTAAAA TATTTTACTT 
TGCCATTCCC AACTCTCTCA CTTATTTTTG TTCTTAATGT TAGAAATACA 
TGTTTGTTCT GAATTTATAT TATGAATTTA TATTATGGTT TTCACTAGTG 
TTAGAAATAC ATGTTTGCCA TTCCATTCCC AACTCTCTCC ATAATTAACT 
GTTTTTTTTC TTTCTTTTCT TTAAAACACA CAAAAAATAT TTATTTACAT 
AAATGCAAAT AAAGATGTGT TTGACTTGTA TTATTACAAT TTCTTTTATA 
TTTCAACATA TTTTTCTGAA TTTGTATGTA GCAAATAAAT GTATTCTTTT 
TTAGTTGTTA ATAAAATAAA TGTTTCCTTA CCAAACTTTT TTTTTTTTGC 
AGATTTTACC GACGAGAAAA GTACCAACGT CCAAGTAGGT AAAGGCGGAG 
TAAACGTTAA CACCCATAAA GGTAAAACCG GTAGCGGAAC CGCCGTGAAC 
GTTGGAAGGG AGGTGTACGC G

Gene models with high sequence identity

  1. AT5G25610.1 [+] show detail - BURP domain-containing protein
    E-value: 1e-57; Score: 99.17

AT5G25610.1

Model type
Protein coding
Short Description
BURP domain-containing protein
Curator Summary
responsive to dehydration 22 (RD22) mediated by ABA
Computational Description
RESPONSIVE TO DESSICATION 22 (RD22); FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: response to desiccation, response to salt stress, response to abscisic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BURP (InterPro:IPR004873); BEST Arabidopsis thaliana protein match is: unknown seed protein like 1 (TAIR:AT1G49320.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-15-H13 introduced

  • F08103 - Specific phenotypes were NOT observed.
  • F10529 - Specific phenotypes were NOT observed.
  • F13927 - Specific phenotypes were NOT observed.
  • F15110 - rosette leaf::increased size / rosette leaf::present in greater numbers in organism / stem::increased thickness / cauline leaf::hyponastic / whole plant::increased height / root::present in greater numbers in organism
  • F15701 - Specific phenotypes were NOT observed.
  • F19134 - Specific phenotypes were NOT observed.
  • F19302 - Specific phenotypes were NOT observed.
  • F23714 - Specific phenotypes were NOT observed.
  • F28613 - Specific phenotypes were NOT observed.
  • F28745 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

16 mutant lines found