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  3. RAFL05-15-H17

RAFL05-15-H17

RIKEN Arabidopsis Full-length cDNAs

Resource: (pdz87493)

5 prime EST [+] show sequence

Nucleotide sequence: RAFL05-15-H17 - 5 prime EST 
TGGAGAGAGA GAGAAGCATC CCAGAAAACG ACATTCTGTT CATATGGAGT 
TTTTTCACCA GATCGAGAGC ACGAAGAAGA TGATTACNTG GGTTTTGATT 
TAGTCGGCGA AAANTCCGTA ATCTCATTGT TCGTGATCTC TGGGTTGTTT 
TTCTGGATTG CTGGTGCGGC TGATTCTAGT CAGGATTGTT TTTGGGGTCC 
CTTTCGCTCT ATTTGAATCT GCGTCTGGGT TGTTAAGATT GTACAAGGGG 
TTTCGTGGTT ATTTATGGAA CCTCGTGTGG GGAACAAGTT TCGTCTCGGC 
CGAAAGATCG GTAGTGGNTC GTTTGGAGAG ATCTATCTCG GTACTAATAT 
TCATACGAAT GAAGAACTGG CTATTAAGCT

Gene models with high sequence identity

  1. AT4G26100.1 [+] show detail - casein kinase 1
    E-value: 0; Score: 99.21

AT4G26100.1

Model type
Protein coding
Short Description
casein kinase 1
Curator Summary
Encodes a member of the casein kinase 1 protein family that is expressed in punctate particles at the cell periphery suggesting possible plasmodesmatal localization.
Computational Description
casein kinase 1 (CK1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasmodesma; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: casein kinase I-like 12 (TAIR:AT5G57015.1); Has 62578 Blast hits to 62222 proteins in 2324 species: Archae - 33; Bacteria - 9966; Metazoa - 23829; Fungi - 6469; Plants - 10923; Viruses - 370; Other Eukaryotes - 10988 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-15-H17 introduced

  • F07828 - Specific phenotypes were NOT observed.
  • F17034 - Specific phenotypes were NOT observed.
  • F20227 - Specific phenotypes were NOT observed.
  • F23423 - Specific phenotypes were NOT observed.
  • F28012 - rosette leaf::increased size / rosette leaf::decreased size / rosette leaf::abnormal / whole plant::decreased height
  • F30311 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found