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RAFL05-15-L10

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02650)

full reading [+] show sequence

Nucleotide sequence: RAFL05-15-L10 - full reading 
TGATTCTAGG GTTTTAGAGT TTCCGCACGA ATCACGAATC TCTCTCTCTT 
TCACACACTT CACACTTTCA ATATACACTC TCATTATGAC TACCGAAGAG 
AAAGAGATCC TCGCCGCCAA ATTGGAAGAA CAGAAGATCG ATCTCGATAA 
GCCCGAAGTT GAGGACGATG ATGATAACGA AGACGATGAC TCTGATGACG 
ATGATAAGGA TGATGACGAG GCTGATGGAC TAGATGGAGA GGCAGGAGGT 
AAGTCAAAAC AAAGCAGAAG TGAGAAGAAG AGTCGCAAAG CCATGCTCAA 
GCTTGGCATG AAACCCATCA CTGGTGTTAG CCGAGTCACC GTCAAAAAGA 
GCAAGAATAT CTTGTTTGTC ATATCAAAGC CTGATGTGTT CAAGAGTCCA 
GCATCAGACA CATATGTGAT CTTTGGAGAG GCGAAGATCG AGGATTTGAG 
CTCTCAGATC CAGTCGCAAG CAGCAGAGCA ATTCAAGGCA CCAGATCTCA 
GCAATGTGAT CTCAAAGGGT GAGTCATCGA GCGCTGCAGT GGTTCAGGAT 
GATGAGGAGG TTGACGAGGA AGGTGTTGAG CCAAAGGACA TTGAGTTGGT 
GATGACTCAA GCAGGAGTGT CTAGGCCAAA TGCTGTGAAG GCTCTCAAGG 
CTGCAGATGG AGATATTGTC TCTGCCATCA TGGAGCTTAC CACCTAAACC 
AAAGTCTTTT CTACTTAGAT GTGGTTTAAC CTGAGTTATG TGCCAGAGAT 
TGTCTAAAGA ATTCGGAAAT TTTTGGTTTC AATGTTTTTC ATGAAGTGAT 
TTTCGATGTT GTATCAGTAT AAACCTCATA AGTTTTTGAT TTTCAGTTTG 
ATTTTATATT G

Gene models with high sequence identity

  1. AT3G12390.1 [+] show detail - Nascent polypeptide-associated complex (NAC), alpha subunit family protein
    E-value: 0; Score: 99.88

 

InterPro Scan Digest

Program Description E-value
HMMPIR Nascent polypeptide-associated complex, alpha subunit 4.4e-83
ProfileScan Nascent polypeptide-associated complex NAC 18.078
HMMPfam Nascent polypeptide-associated complex NAC 1e-23
HMMPfam Ubiquitin-associated/translation elongation factor EF1B, N-terminal 5.9e-05

See the detailed result >

AT3G12390.1

Model type
Protein coding
Short Description
Nascent polypeptide-associated complex (NAC), alpha subunit family protein
Computational Description
Nascent polypeptide-associated complex (NAC), alpha subunit family protein; INVOLVED IN: response to salt stress; LOCATED IN: cytosolic ribosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Nascent polypeptide-associated complex, alpha subunit (InterPro:IPR016641), Nascent polypeptide-associated complex NAC (InterPro:IPR002715); BEST Arabidopsis thaliana protein match is: nascent polypeptide-associated complex subunit alpha-like protein 3 (TAIR:AT5G13850.1); Has 5275 Blast hits to 2514 proteins in 367 species: Archae - 69; Bacteria - 684; Metazoa - 1880; Fungi - 785; Plants - 552; Viruses - 60; Other Eukaryotes - 1245 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-15-L10 introduced

  • F09145 - Specific phenotypes were NOT observed.
  • F14115 - seed::increased size / seed::increased length
  • F17729 - Specific phenotypes were NOT observed.
  • F22630 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found