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  3. RAFL05-15-M17

RAFL05-15-M17

RIKEN Arabidopsis Full-length cDNAs

Resource: (pdz87495)

5 prime EST [+] show sequence

Nucleotide sequence: RAFL05-15-M17 - 5 prime EST 
AATTAATTTT CTCACTCAAT AATGAAGAAA ACTGCGAAAG CGTGCAGATA 
AGAGAGATCT CTCTGAACAG ATATTATAGT TGATAGTTTG CGTACTAGGA 
GTCTGTGAAA GCTTGCACAG GAAGAAAGCA AATCGGGAAA GAAAGGAATC 
TGAATCGGAG AAGCAATCGA GGTTTACGAT TACCAAATTC TGATCTAATC 
TGATTAATTG TGGTGATTTC CGATGGAAGA AGACGGTGGT GGCGGCGGTG 
CGAAAGTTGG AATGCTGGAG AATTTCATGA AGACGCATCA GAGTTCTTTG 
AAATCGTTAT TCCAGAGAAA GAAATCATCC TCTGGTCGTG ATGGAGATGC 
TTCTCCGTCG CCTATCGCTT CCCCGAAACC TATTCCGCAG CTCTCTCTTC 
TCGCCAATTC CGTCGTCTCC CGCTGTTCAA AGATCCTGAA CATTCAAACA 
GAAGATCTGC AGCATCATTT TGATGTAGAG TTGCCTGAGA GTGTTAAGCA 
ACTATTGACA TATGCAAGGA ACTTTTTAGA GTTCTGCTCT TTTCAGGCAC 
TTCATCAAGT GATGAAAAAA CCTGATTACT TGAGTGATCA AGAGTTCCGT 
CAGCTAATGT TTGACATGAT GCTTGCTTGG GAGACTCCCA GTGTCACAAG 
TGAGCANGAA AACAA

Gene models with high sequence identity

  1. AT5G23390.1 [+] show detail - Plant protein of unknown function (DUF639)
    E-value: 0; Score: 99.85

3 prime EST [+] show sequence

Nucleotide sequence: RAFL05-15-M17 - 3 prime EST 
AGTCAAAAAA CGAGTTAGTT CGTCTCATAT TTATGAATAA ACCCGAATCT 
TACTTAAAAA GGGGAAAAAA AAAAGAAGAA GAATAAAAAA TTCTAATATC 
AAAACAATAT GTCTAGAAAG A

Gene models with high sequence identity

  1. AT5G23390.1 [+] show detail - Plant protein of unknown function (DUF639)
    E-value: 2e-58; Score: 99.17

AT5G23390.1

Model type
Protein coding
Short Description
Plant protein of unknown function (DUF639)
Computational Description
Plant protein of unknown function (DUF639); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF639 (InterPro:IPR006927); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF639) (TAIR:AT1G48840.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-15-M17 introduced

  • F18241 - rosette leaf::abnormal / rosette leaf::present in greater numbers in organism / cauline leaf::decreased size / stem::decreased thickness / stem::abnormal / whole plant::decreased height

Mutant lines with disrupted or induced

2 mutant lines found