1. Home
  2. Full-length cDNAs
  3. RAFL05-15-O22

RAFL05-15-O22

RIKEN Arabidopsis Full-length cDNAs

Resource: (pdz87496)

5 prime EST [+] show sequence

Nucleotide sequence: RAFL05-15-O22 - 5 prime EST 
GGGATCATTC ATAGCTGCGA CTATTCTCTG CTCTTTCTAC ATTTTCTCAT 
TTTCTCTTGG GCTACTTTTC GACTACTAAC AAATCCAACG ATGAGGGGAT 
AGGTGAACAA GCTCGTGTCC AGATCTCTCT CCATCTCCGG GAAATGGCAG 
AACCAACAGC TTCGTCGTCT CAACATCCAC GAGTATCAGG GAGCTGAATT 
GATGGGGAAA TATGGAGTTA ATGTGCCGAA AGGAGTAGCT GCTTCTTCGT 
TGGAAGAAGT TAAAAAGGCT ATTCAAGATG TTTTCCCTAA TGAAAGCGAG 
TTGGTTGTTA AGAGCCAGAT TTTGGCTGGT GGAAGAGGTC TTGGAACATT 
CAAGAGTGGT CTTAAGGGTG GTGTTCACAT TGTTAAACGT GATGAGGCTG 
AAGAGATTGC TGGAAAGATG CTAGGACAAG TACTTGTCAC CAAGCAAACT 
GGTCCTCAAG GCAAAGTAGT TAGCAAGGTT TACTTGTGTG AGAAATTGTC 
ACTCGTCAAT GAGATGTACT TTTCCATTAT TCTGGACCGT AAATCTGCTG 
GACCGTTGAT CATTGCCTGT AAAAAGGGTG GTACCAGTAT TGAAGATCTT 
GCTGAGAAGT TCCCTGACAT GATCATCAAG GTACCAATTG ATGTATTTGC 
AGGAATCACT

Gene models with high sequence identity

  1. AT2G20420.1 [+] show detail - ATP citrate lyase (ACL) family protein
    E-value: 0; Score: 99.85

3 prime EST [+] show sequence

Nucleotide sequence: RAFL05-15-O22 - 3 prime EST 
GGTAAACTTG AAACCCTAGT ATCAACCATA TGAGTTGGTT AAATACAAAA 
AGATATTGAG AATTCTGATT TGAATCTCTT TGGATGGATC ACACAAAAAA 
AGGAGACCAG TTCATTATTG ATCTGTTTGA GGAAATGATA TCCGCAAGAA 
AGTGTAAATT GGGCGTCAAC CACAAAACAA TTAACAAACC GGCTTTTGGT 
ATATATAGAG AGATTAGTGA GCTAAAGCTT TAACCGCTTT CTCAGCTGCA 
TCATCCAAAT CATCAGCTGT TATGAGTTTC ATTCCACTTT CCTTGAGGAT 
TCTCTTTCCC TGCTCAACAT TCGTTCCTTC TAGACGAACC ACCACTGGCA 
CTTTCAATGC GACCTCTTTT GCAGCGTTCA CGATTCCACT AGCAATCACA 
TCACATTTCA TTATCCCACC AAATATGTTC ACCAAGATTG CTTTCACTTT 
ATCGTCCGAT GTCAGTATCT TAAACGCTTC CACCACCTGG TGCTCAGAAG 
CATTTCCACC AACGTCAAGG AAATTGGCGG GTGTTCCACC GTGTAATTTA 
ATGATGTCCA TGGTTGCCAT GGCCAATCCA GCACCATTCA CCATGCAACC 
AATCTCTCCA TCTAAACCGA TGTAGTTCA

Gene models with high sequence identity

  1. AT2G20420.1 [+] show detail - ATP citrate lyase (ACL) family protein
    E-value: 0; Score: 100.00

AT2G20420.1

Model type
Protein coding
Short Description
ATP citrate lyase (ACL) family protein
Computational Description
ATP citrate lyase (ACL) family protein; FUNCTIONS IN: succinate-CoA ligase (GDP-forming) activity, copper ion binding, ATP binding; INVOLVED IN: response to cadmium ion, metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Succinyl-CoA synthetase, beta subunit (InterPro:IPR005809), Succinyl-CoA synthetase, beta subunit, conserved site (InterPro:IPR017866), ATP-citrate lyase/succinyl-CoA ligase (InterPro:IPR005811), ATP-grasp fold (InterPro:IPR011761), ATP-grasp fold, subdomain 2 (InterPro:IPR013816), ATP-grasp fold, succinyl-CoA synthetase-type (InterPro:IPR013650), Succinyl-CoA synthetase-like (InterPro:IPR016102); BEST Arabidopsis thaliana protein match is: ATP-citrate lyase A-1 (TAIR:AT1G10670.4); Has 9337 Blast hits to 9333 proteins in 2108 species: Archae - 181; Bacteria - 4147; Metazoa - 466; Fungi - 228; Plants - 81; Viruses - 0; Other Eukaryotes - 4234 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-15-O22 introduced

  • F22215 - Specific phenotypes were NOT observed.
  • F30319 - seed::increased size

Mutant lines with disrupted or induced

4 mutant lines found