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RAFL05-15-P08

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02658)

full reading [+] show sequence

Nucleotide sequence: RAFL05-15-P08 - full reading 
GACGGTGCGA CAAGATGGCG AGCTCAGTGA CGCTGCTTCT ATGGAGTCTT 
CTTCTTCTCG GTACACTAAG CGCTATTCAG GCCAAAAAGT CTAAGGAAAA 
CTTAAAGGAG ATCACACACA AGGTTTATTT TGATGTTGAA ATTGATGGGA 
AAGCAGCTGG TCGTATTGTC ATGGGTCTAT TTGGCAAGAC AGTCCCCAAA 
ACTGTAGAGA ATTTCCGAGC TTTATGCACT GGGGAGAAAG GAATAGGTAA 
GAATGGGAAG GCGCTCCATT ACAAGGGGAG TTCATTTCAT AGGATCATAC 
CAAGCTTTAT GCTCCAAGGA GGCGATTTTA CACATGGAAA TGGAATGGGA 
GGAGAATCTA TCTATGGTGA GAAGTTTGCT GATGAGAACT TCAAACTCAA 
GCATACTGGT CCAGGGTTCT TATCAATGGC AAATGCCGGT CAAGATACCA 
ACGGATCACA GTTTTTCATC ACAACTGTAA CAACCAGCTG GTTGGATGGG 
CGACATGTGG TATTCGGGAA GGTAGTGACA GGAATGGATG TGGTGTACAA 
AGTCGAAGCT GAAGGAAATC AGAGTGGAAC TCCTAAGAGT AAAGTGGTGA 
TTGTAGACAG TGGTGAGCTT CCCCTGTAAC TCAACAACTC TAGTTTTCTC 
CATCTGATCA TCCATTGATG TGAGCTCTAG TGTGCTTGAT GACTTTTGTG 
TTAAAACGAG TGTCTTGGTT ACTTTATGAA AGATTCTACC GGCTTTATTT 
CTTTCGTCTG CTTTCTAGCT CGAGCTATGT CTGACTTTAT ACACAAATGT 
CTTTCAGTAG CAAAAATTCT GCACTTATGC CG

Gene models with high sequence identity

  1. AT5G58710.1 [+] show detail - rotamase CYP 7
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
ProfileScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 44.793
HMMPfam Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 1.9e-45
FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 6.6e-39
FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 6.6e-39
FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 6.6e-39
FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 6.6e-39
FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 6.6e-39
HMMPanther CYCLOPHILIN 2.9e-113
HMMPanther CYCLOPHILIN 2.9e-113
PatternScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site 0
superfamily Cyclophilin-like 1.4e-70
Gene3D Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 3.2e-64

See the detailed result >

AT5G58710.1

Model type
Protein coding
Short Description
rotamase CYP 7
Curator Summary
Encodes cyclophilin ROC7.
Computational Description
rotamase CYP 7 (ROC7); FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, root development; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: cyclophilin 5 (TAIR:AT2G29960.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-15-P08 introduced

  • F27536 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found