1. Home
  2. Full-length cDNAs
  3. RAFL05-16-A08

RAFL05-16-A08

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02661)

full reading [+] show sequence

Nucleotide sequence: RAFL05-16-A08 - full reading 
ACACAATCAC AGAACCTAAT CTTCTTCTCC AATCAATCTC AGAGAAAAAA 
AGAAATGGCA ACAAACCCTA AAGTCTACTT CGACATGACC GTCGGTGGCA 
AATCCGCCGG TCGTATCGTG ATGGAGCTTT ACGCCGACAC AACACCAGAA 
ACCGCCGAGA ATTTCAGAGC ACTCTGTACC GGAGAGAGAG GAATCGGTAA 
ACAAGGTAAG CCATTACACT ACAAAGGATC AAGCTTTCAC CGAGTGATTC 
CGAAATTCAT GTGTCAAGGA GGTGATTTCA CAGCCGGGAA TGGTACCGGA 
GGTGAATCTA TCTATGGATC GAAGTTCAAA GACGAGAACT TTATCAAGAA 
ACATACAGGA CCAGGTATTT TGTCTATGGC TAACGCTGGT GCGAACACGA 
ATGGATCTCA GTTTTTTATT TGTACTGAGA AGACTTCGTG GCTCGATGGG 
AAACATGTTG TGTTTGGTCA AGTTGTTGAG GGATTGAATG TTGTTAGAGA 
TATTGAGAAG GTTGGATCTG ACTCTGGAAG AACTTCTAAG CCTGTTGTCA 
TTGCTGATTG TGGTCAGATT TCTTAGATCT GTCTGAGATT GTTGATGATG 
ATGATGATGA TCTTGAGGAT CCAATGGTAG CTTTGTGTTG TTTCTCTTTG 
ATGTTTTCTG GTTTATGTTT TTGGATTTTG ATGTTTATTG CTGTTGTGAA 
ACTTTGAGTT TGGCTACCAT TGAATAAGAA GAATGAGAAT

Gene models with high sequence identity

  1. AT2G16600.1 [+] show detail - rotamase CYP 3
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 7e-48
ProfileScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 45.469
FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 2.4e-40
FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 2.4e-40
FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 2.4e-40
FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 2.4e-40
FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 2.4e-40
PatternScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site 0
HMMPanther CYCLOPHILIN 3.7e-122
superfamily Cyclophilin-like 4.3e-75
Gene3D Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 4.2e-68

See the detailed result >

AT2G16600.1

Model type
Protein coding
Short Description
rotamase CYP 3
Curator Summary
Encodes cytosolic cyclophilin ROC3.
Computational Description
rotamase CYP 3 (ROC3); FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, signal transduction; LOCATED IN: cytosol, chloroplast, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT2G21130.1); Has 16363 Blast hits to 16328 proteins in 2676 species: Archae - 108; Bacteria - 6734; Metazoa - 2930; Fungi - 1383; Plants - 1279; Viruses - 4; Other Eukaryotes - 3925 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-16-A08 introduced

  • F03032 - Specific phenotypes were NOT observed.
  • F09333 - Specific phenotypes were NOT observed.
  • F23935 - Specific phenotypes were NOT observed.
  • F24404 - Specific phenotypes were NOT observed.
  • F25141 - Specific phenotypes were NOT observed.
  • F25315 - Specific phenotypes were NOT observed.
  • F25545 - Specific phenotypes were NOT observed.
  • F30213 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

9 mutant lines found