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  3. RAFL05-16-B15

RAFL05-16-B15

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07343)

full reading [+] show sequence

Nucleotide sequence: RAFL05-16-B15 - full reading 
ACTACACCCA AAAAAGCTTC TAACAAAGAG AAAGTGTCTG TATGTTGTGC 
CCACTCTCTA CATTTATCAA TCACTTCATG TGTGTTACCT TGATTGCAAA 
AAAGTGAGAA TATATTCTCA CAACATTAAA TCCACCCCGA AATCGAAGTG 
AGTATATCAC GAGTGTAGTA ATATCTTAGA GATGGTTTTG GAGGATAGAA 
AGGACGGTTC TTCTTTGCCG GGACGATCCG GTAGTTTCTC TAAATCGTCA 
CCGTCGGAGT TGGATGTTGT TGATCCCTAC AAGCGGATAA GTTCGCCGGG 
ATCTATATTG GATGCTGAGA AGGTAGAGAA AAAGCCTGGA GGATGGAGAG 
CCGTCTCGTT CATTTTAGGA AATGAGACGC TGGAGAGACT GGGATCGATA 
GGATTGTTGG CAAACTTCAT GGTTTATCTA ACCAAAGTGT TTCACTTAGA 
ACAAGTCGAC GCTGCAAATG TCATCAACAT TTGGTCAGGT TTCACCAATC 
TCACTCCTCT CGTCGGAGCG TATATCTCAG ACACTTATGT TGGCCGCTTC 
AAGACCATCG CTTTCGCCTC ATTCGCCACT CTCCTCGGAC TAATAACAAT 
TACACTCACA GCATCGTTTC CTCAACTCCA CCCAGCATCA TGCAACAGCC 
AGGACCCACT CAGTTGCGGC GGTCCGAATA AGCTCCAGAT CGGAGTTTTG 
CTATTGGGAC TCTGTTTCCT CTCCGTAGGG AGTGGAGGAA TACGACCTTG 
TAGCATCCCT TTTGGGGTTG ATCAGTTTGA CCAACGAACT GAGGAAGGGG 
TTAAAGGAGT GGCCAGTTTC TTCAACTGGT ATTACATGAC TTTCACTGTG 
GTTCTGATCA TTACACAGAC CGTAGTTGTG TATATCCAGG ATCAAGTCAG 
TTGGATTATC GGTTTTAGTA TCCCTACCGG ACTCATGGCT CTTGCGGTTG 
TTATGTTTTT TGCCGGAATG AAGCGTTATG TCTACGTTAA ACCAGAAGGA 
AGTATATTCT CTGGGATCGC TCAAGTTATC GTGGCAGCTC GTAAGAAGCG 
AAAGCTGAAA CTTCCGGCGG AAGATGACGG CACTGTCACC TATTACGACC 
CAGCCATCAA GTCTAGCGTG TTATCCAAGT TACACCGCAG TAACCAATTC 
AGGTGTCTTG ACAAAGCCGC GGTGGTTATA GAAGGTGACC TAACACCCGA 
GGGACCTCCC GCAGACAAGT GGCGGTTATG CAGCGTCCAA GAAGTGGAAG 
AAGTGAAGTG TTTGATCCGA ATTGTTCCTA TCTGGTCGGC CGGAATAATC 
TCACTCGCGG CCATGACAAC ACAAGGCACT TTCACGGTCT CTCAAGCTTT 
GAAAATGGAT CGAAACTTAG GTCCTAAATT CGAGATTCCG GCTGGTTCAC 
TCTCCGTCAT CTCTCTCCTC ACAATCGGCA TCTTTCTTCC CTTCTACGAC 
CGCGTTTTTG TACCATTCAT GCGGCGAATC ACCGGCCATA AATCCGGAAT 
CACACTCCTC CAAAGGATAG GAACAGGGAT CGTTTTCGCG ATCTTTTCTA 
TGATCGTTGC GGGCATTGTG GAGCGTATGA GACGCATACG CTCCATCAAT 
GCCGGAGATC CAACGGGAAT GACTCCAATG TCGGTGTTTT GGCTTTCGCC 
GCAGCTAATT CTCATGGGAC TATGTGAAGC ATTCAATATC ATCGGACAAA 
TTGAGTTCTT CAACAGTCAG TTTCCAGAGC ACATGAGAAG TATCGCTAAC 
TCTCTCTTCT CTTTATCGTT CGCCGGTTCG AGCTACCTTA GTAGTTTCCT 
TGTGACTGTC GTTCATAAAT TCTCCGGTGG GCATGATCGT CCGGATTGGC 
TAAACAAGAA TCTCAACGCG GGAAAATTGG ATTACTTCTA TTATCTGATT 
GCGGTTTTGG GTGTGGTTAA TCTGGTTTAC TTTTGGTATT GTGCTCGGGG 
ATACCGGTAC AAGGTCGGTT TACCGATTGA AGACTTTGAG GAGGACAAGT 
CCTCCGATGA TGTTGAGATG ACTTCGAAGA AATCGATGAA ATGATTTAAT 
AGACTATCCT TAGGGACAAC AAGAAGATTG TCGATGTTGT TTGAATAATT 
ACTATGACAA TGTATGTATC ATAATATGTA AGAACTAGAA TATTTAATAA 
AATTTTACCT TTCATTAG

Gene models with high sequence identity

  1. AT1G69870.1 [+] show detail - nitrate transporter 1.7
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Major facilitator superfamily, general substrate transporter 1e-23
HMMPanther NITRATE TRANSPORTER (NRT1) 0
HMMPanther OLIGOPEPTIDE TRANSPORTER-RELATED 0
HMMPfam Oligopeptide transporter 1.5e-70

See the detailed result >

AT1G69870.1

Model type
Protein coding
Short Description
nitrate transporter 1.7
Curator Summary
Encodes a low affinity nitrate transporter NRT1.7. Expressed in phloem. Responsible for source-to-sink remobilization of nitrate.
Computational Description
nitrate transporter 1.7 (NRT1.7); FUNCTIONS IN: low affinity nitrate transmembrane transporter activity, transporter activity; INVOLVED IN: oligopeptide transport, response to salt stress, nitrate transport, low affinity nitrate transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nitrate transporter 1.6 (TAIR:AT1G27080.1); Has 4600 Blast hits to 4423 proteins in 820 species: Archae - 0; Bacteria - 1236; Metazoa - 519; Fungi - 428; Plants - 2212; Viruses - 0; Other Eukaryotes - 205 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-16-B15 introduced

  • F10745 - Specific phenotypes were NOT observed.
  • F23106 - seed::increased width
  • F23601 - Specific phenotypes were NOT observed.
  • F28507 - seed::increased size
  • F30036 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found