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  3. RAFL05-16-C09

RAFL05-16-C09

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02668)

full reading [+] show sequence

Nucleotide sequence: RAFL05-16-C09 - full reading 
ACAAACACTA GAAACCACAA AGACAAAATC AAGGTCTTAA ACAATGAGAT 
CCCATCTCTT GATTTTGTTA ATCTCTCTCT TAATCTTGAA ATCTGAATCC 
ATAAACTGCA ATGAAAAGAG CCATTCCTCA GATCTAAGAG TGTTCCACAT 
TAACAGTCTA TGTTCTCCAT TCAAAACTTC TGTTTCATGG GCAGATACAC 
TTCTTCAAGA TAAGGCTCGT TTCCTATACT TGTCAAGCCT CGCTGGCGTT 
AGGAAATCAT CAGTTCCAAT CGCCTCTGGT CGGGCCATCG TTCAGAGCCC 
GACTTACATC GTGAGGGCTA ACATCGGGAC ACCGGCTCAG CCCATGCTCG 
TGGCTCTTGA CACTAGCAAT GACGCTGCTT GGATTCCTTG TTCTGGCTGC 
GTTGGCTGTT CTTCCTCTGT TCTCTTTGAC CCTTCCAAGT CAAGCTCCTC 
TCGTACTCTT CAATGCGAAG CTCCTCAGTG TAAACAGGCT CCAAATCCAA 
GTTGCACAGT AAGCAAATCA TGTGGTTTCA ACATGACCTA CGGTGGTTCA 
ACCATCGAAG CATATCTGAC ACAAGACACA CTAACATTGG CCAGTGACGT 
CATCCCAAAC TACACCTTTG GGTGCATCAA CAAAGCTAGT GGAACATCGT 
TGCCAGCGCA AGGACTCATG GGCTTAGGTC GTGGTCCATT GTCTTTAATC 
TCACAGTCAC AAAATCTTTA TCAGTCTACA TTCTCGTATT GCTTGCCTAA 
TAGTAAGTCC AGCAATTTCT CCGGATCACT AAGATTGGGA CCTAAGAACC 
AACCGATCCG GATCAAGACC ACTCCATTGT TAAAGAACCC TAGAAGATCA 
TCGCTTTACT ATGTTAACTT GGTTGGGATT CGTGTCGGAA ACAAAATTGT 
GGATATTCCT ACAAGTGCAC TCGCCTTTGA TCCGGCCACC GGAGCCGGCA 
CCATCTTTGA CTCGGGGACG GTCTACACAA GGCTAGTCGA ACCAGCTTAC 
GTGGCGGTGA GAAACGAGTT CAGGAGACGT GTTAAGAACG CAAACGCAAC 
TTCACTAGGA GGTTTCGACA CATGCTACTC CGGCTCCGTC GTGTTCCCGT 
CGGTGACGTT TATGTTCGCC GGAATGAACG TGACTCTGCC TCCAGACAAC 
CTTCTCATCC ACAGCTCCGC AGGTAACCTC AGCTGCCTCG CCATGGCTGC 
AGCTCCGGTC AACGTTAACT CTGTCCTTAA CGTCATCGCT AGTATGCAGC 
AACAGAACCA CCGAGTTCTC ATCGACGTTC CAAATTCCAG GCTCGGAATT 
TCCCGTGAAA CTTGCACCTA AGTTTTATCG ATTTGTATTT TTGTTTTCGG 
TCGATTTCGT AATGCGTTTT GAACTTTTGA ATTTTGGAAA CTATATAAGT 
TAATGATTTT TGTTAATTCT CAG

Gene models with high sequence identity

  1. AT3G54400.1 [+] show detail - Eukaryotic aspartyl protease family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther CHLOROPLAST NUCLEIOD DNA-BINDING-RELATED 2.3e-115
HMMPanther Peptidase A1 2.3e-115
Gene3D Peptidase aspartic, catalytic 5.1e-38
superfamily Peptidase aspartic 1.5e-83
HMMPfam Peptidase A1 1.4e-17

See the detailed result >

AT3G54400.1

Model type
Protein coding
Short Description
Eukaryotic aspartyl protease family protein
Computational Description
Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: apoplast, cell wall, chloroplast, plant-type cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT5G07030.1); Has 3653 Blast hits to 3640 proteins in 325 species: Archae - 0; Bacteria - 0; Metazoa - 1052; Fungi - 421; Plants - 1910; Viruses - 0; Other Eukaryotes - 270 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-16-C09 introduced

  • F09611 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

2 mutant lines found