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  3. RAFL05-16-D23

RAFL05-16-D23

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01302)

full reading [+] show sequence

Nucleotide sequence: RAFL05-16-D23 - full reading 
CCTAAAAGCT GAGCCGCGTC GAGAGCATTT TATATCTTCA ATCATCTTAC 
GCAGGCTGTT GTAGCAGCAG TGTCTATCGG AGACGATGAA GTTCAACGTC 
GCCAATCCGA CCACCGGGTG TCAAAAGAAA CTCGAGATCG ATGACGATCA 
AAAACTCCGC GCCTTTTTCG ACAAGAGGCT CTCTCAGGAA GTTAGCGGAG 
ATGCTCTAGG CGAGGAATTC AAGGGATACG TATTCAAGAT CATGGGAGGA 
TGTGACAAGC AAGGTTTCCC AATGAAACAA GGAGTTCTCA CTCCAGGGCG 
TGTCCGTCTT TTGCTTCACC GAGGTACTCC TTGTTTTAGA GGACACGGAA 
GGAGGACTGG AGAGAGGAGA CGAAAGTCTG TCCGTGGTTG CATTGTGAGC 
CCTGACCTGT CTGTTCTTAA CTTGGTCATT GTGAAGAAGG GTGTAAGTGA 
TCTTCCCGGG CTTACCGACA CTGAGAAGCC AAGAATGAGA GGTCCCAAGA 
GGGCATCAAA GATCCGCAAG TTGTTTAACC TTGGAAAAGA GGATGATGTG 
AGGAAGTACG TTAACACTTA CCGCCGTACC TTCACAAACA AGAAGGGCAA 
GAAGGTTAGC AAGGCTCCTA AGATCCAGAG GCTTGTGACT CCATTGACCC 
TCCAGAGGAA GAGAGCTAGA ATTGCTGACA AGAAGAAGAG AATCGCCAAG 
GCTAACTCTG ATGCAGCTGA TTACCAGAAG CTTCTTGCCT CCAGACTAAA 
GGAGCAGCGT GATCGCCGTA GTGAAAGTTT GGCCAAGAAG AGGTCTAGAC 
TCTCTTCTGC TCCTGCTAAA CCCGTTGCTG CTTAAACTGC CTCAAGATTA 
AGAAATTTCT TTCTCTCTAG TTTGTTTCTG GTCGTATTTA AGTTGCTCCA 
CAGACATGAG AACGCCATTT TGAACACTAT TTTTGGTTTC TGTTTTGTGT 
CAACTTTTCA AGCCTTTTAT TATATCAAAG TTTTGAACCT CTC

Gene models with high sequence identity

  1. AT5G10360.1 [+] show detail - Ribosomal protein S6e
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
PatternScan Ribosomal protein S6e, conserved site 0
HMMPanther 40S RIBOSOMAL PROTEIN S6 3e-151
HMMPanther Ribosomal protein S6e 3e-151
HMMPIR Ribosomal protein S6, eukaryotic 1e-170
HMMPfam Ribosomal protein S6e 2e-54
Coil coiled-coil 0

See the detailed result >

AT5G10360.1

Model type
Protein coding
Short Description
Ribosomal protein S6e
Curator Summary
RPS6A and RPS6B are fully redundant and essential during gametogenesis.
Computational Description
embryo defective 3010 (EMB3010); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: growth, translation, embryo development ending in seed dormancy; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, plasma membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S6e (InterPro:IPR001377), Ribosomal protein S6, eukaryotic (InterPro:IPR014401), Ribosomal protein S6e, conserved site (InterPro:IPR018282); BEST Arabidopsis thaliana protein match is: ribosomal protein S6 (TAIR:AT4G31700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-16-D23 introduced

  • F09648 - Specific phenotypes were NOT observed.
  • F18613 - Specific phenotypes were NOT observed.
  • F21720 - Specific phenotypes were NOT observed.
  • F28439 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

7 mutant lines found