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RAFL05-16-E01

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07347)

full reading [+] show sequence

Nucleotide sequence: RAFL05-16-E01 - full reading 
AATGGCTTCG ACGGCTACGA ACACTGATTT CTTCAAGACT TTGCTTTCTC 
CTTTCTCAAA TGGGAATGCG GCGCAACGAA GTAGTAGACA GAACATTGTT 
TGGTTAAATC GGAAGCAATC TGGAAATAAT AACAGATCTC TTCGTGTTAA 
TGGATTATTC GGAGGCGGAA AAAAGGACAA TAAAGAGGAT GGACAATCAA 
AGGCAGGAAT TCTAGGTAAC ATGCAGAATT TGTATGAGAC AGTGAAGAAA 
GCTCAAATGG TTGTTCAAGT AGAGGCTGTT AGAGTGCAGA AGGAGCTTGC 
TGTTGCTGAA TTTGATGGTT ATTGTCAAGG CGAGCTTGTC AAGGTTACAT 
TATCAGGTAA CCAGCAACCA ATTCGCACTG ATATCACTGA TGCAGCAATG 
GAGTTAGGTT CTGAAAAACT TTCACTGCTG GTCACAGAAG CATACAAAGA 
CGCACATTCA AAGAGTGTAC TGGCTATGAA AGAAAGAATG AGTGATCTTG 
CGCAGAGCTT AGGGATGCCA CCAGGCCTTG ATGGATTAAA GTAACAAAAC 
TTAATCTTTT TTGTGATTTC TTTCAACTTA TAGGTATGAG AAGTCCAGTT 
CTTTTTGTTG TATATCGATC AGGCAGAGAG AAATAGAGCT CTGTTCTACT 
GAATCAGAGA GAGATATTTG AACC

Gene models with high sequence identity

  1. AT4G30620.1 [+] show detail - Uncharacterised BCR, YbaB family COG0718
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Uncharacterised protein family UPF0133 1.2e-19
HMMPfam Uncharacterised protein family UPF0133 0.0000000000000061
HMMTigr Uncharacterised protein family UPF0133 0.00000000329999802154459
Gene3D Uncharacterised protein family UPF0133 7.89999609889499e-20

See the detailed result >

AT4G30620.1

Model type
Protein coding
Short Description
Uncharacterised BCR, YbaB family COG0718
Computational Description
Uncharacterised BCR, YbaB family COG0718; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0133 (InterPro:IPR004401); BEST Arabidopsis thaliana protein match is: Uncharacterised BCR, YbaB family COG0718 (TAIR:AT2G24020.2); Has 1854 Blast hits to 1854 proteins in 759 species: Archae - 0; Bacteria - 1576; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 225 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-16-E01 introduced

  • F09038 - Specific phenotypes were NOT observed.
  • F22308 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found