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  3. RAFL05-16-E05

RAFL05-16-E05

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02673)

full reading [+] show sequence

Nucleotide sequence: RAFL05-16-E05 - full reading 
AAAAGTTACA AACGCGACTC TCTGATCCTA AATTTCGTTG TACAGAGAAG 
AAGCAAAAGA GAGAAACATC TGACCCGGAA TCTGACCTGA AAACCCGGAA 
GAATCGAAAA ATGGGGAAAG ATGGTCTGAG CGACGATCAG GTCTCGTCGA 
TGAAGGAAGC CTTCATGCTC TTCGACACCG ATGGCGACGG CAAAATCGCA 
CCGTCAGAGC TCGGGATCCT CATGCGATCT CTCGGCGGAA ACCCGACCCA 
AGCCCAGCTG AAATCCATAA TCGCATCCGA GAATCTCTCT TCACCGTTTG 
ATTTCAACAG ATTCCTCGAT CTCATGGCGA AACATCTGAA GACGGAACCT 
TTCGATCGCC AGCTCCGTGA CGCATTCAAA GTGCTCGATA AGGAAGGTAC 
CGGGTTCGTT GCTGTGGCGG ATCTGAGGCA TATTCTGACC AGTATCGGAG 
AGAAGCTGGA GCCTAATGAG TTCGATGAGT GGATCAAGGA GGTGGATGTT 
GGATCCGATG GAAAGATCCG GTATGAAGAT TTCATAGCAA GGATGGTTGC 
TAAGTGAGAT CTAATCTTTT ATGTTTTGAA AGTTGAAATT TTTAAGAAGA 
GATTCTTTGT GTTTTTTTCA CTTGTTTGTT TGATTTCGAG CGAATCCTAG 
CTAGGGTTTG TTTTATCATT GTGGAATTTG CTTACTAACT TTGTCTTCTT 
CATGTTTGTT TTCATTTTTA ATGGAAATGT TGTCTGTGTG C

Gene models with high sequence identity

  1. AT1G12310.1 [+] show detail - Calcium-binding EF-hand family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
PatternScan EF-Hand 1, calcium-binding site 0
Gene3D EF-hand-like domain 4e-34
HMMSmart Calcium-binding EF-hand 0.000027
HMMSmart Calcium-binding EF-hand 0.11
HMMSmart Calcium-binding EF-hand 0.089
ProfileScan EF-HAND 2 13.453
ProfileScan EF-HAND 2 10.58
ProfileScan EF-HAND 2 9.436
HMMPanther CALMODULIN 1.2e-81
HMMPanther CALMODULIN 1.2e-81
superfamily EF-hand 7.3e-40
HMMPfam EF-hand 0.0000013

See the detailed result >

AT1G12310.1

Model type
Protein coding
Short Description
Calcium-binding EF-hand family protein
Computational Description
Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, nucleus, cytoplasm; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT1G62820.1); Has 15156 Blast hits to 13043 proteins in 1439 species: Archae - 0; Bacteria - 35; Metazoa - 6065; Fungi - 3861; Plants - 3197; Viruses - 0; Other Eukaryotes - 1998 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-16-E05 introduced

  • F14447 - Specific phenotypes were NOT observed.
  • F15931 - seed::increased size / seed::increased length / seed::decreased width

Mutant lines with disrupted or induced

5 mutant lines found