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  3. RAFL05-16-E22

RAFL05-16-E22

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17098)

full reading [+] show sequence

Nucleotide sequence: RAFL05-16-E22 - full reading 
CCTGGTGCGC TCTCATATTT CTCACATTTT CGTAGCCGCA AGACTCCTTT 
CAGATTCTTA CTTGCAGCTA TGGGTAAAGA GAAGTTTCAC ATTAACATTG 
TGGTCATTGG TCATGTTGAT TCTGGAAAAT CGACCACAAC TGGTCACTTG 
ATCTATAAGC TTGGTGGTAT TGACAAGCGT GTCATCGAGA GGTTCGAGAA 
GGAGGCTGCT GAGATGAACA AGAGGTCCTT CAAGTACGCA TGGGTGTTGG 
ACAAACTTAA GGCCGAGCGT GAGCGTGGTA TTACCATCGA TATTGCTCTA 
TGGAAGTTCG AGACCACCAA GTACTACTGC ACAGTCATTG ATGCCCCAGG 
ACATCGTGAT TTCATCAAGA ACATGATTAC TGGTACCTCC CAGGCTGATT 
GTGCTGTTCT TATCATTGAC TCCACCACTG GAGGTTTTGA GGCTGGTATC 
TCTAAGGATG GTCAGACCCG TGAGCACGCT CTTCTTGCTT TCACCCTTGG 
TGTCAAGCAG ATGATTTGCT GTTGTAACAA GATGGATGCC ACCACCCCCA 
AATACTCCAA GGCTAGGTAC GATGAAATCA TCAAGGAGGT GTCTTCATAC 
CTGAAGAAGG TCGGATACAA CCCTGACAAA ATCCCATTTG TGCCAATCTC 
TGGATTCGAG GGAGACAACA TGATTGAGAG GTCAACCAAC CTTGACTGGT 
ACAAGGGACC AACTCTTCTT GAGGCTCTTG ACCAGATCAA CGAGCCCAAG 
AGGCCATCAG ACAAGCCCCT TCGTCTTCCA CTTCAGGATG TCTACAAGAT 
TGGTGGTATT GGAACGGTGC CAGTGGGACG TGTTGAGACT GGTATGATCA 
AGCCTGGTAT GGTTGTTACC TTTGCTCCCA CAGGGTTGAC CACTGAGGTT 
AAGTCTGTTG AGATGCACCA CGAGTCTCTT CTTGAGGCAC TTCCCGGTGA 
CAATGTTGGA TTCAATGTCA AGAATGTTGC TGTCAAGGAT CTTAAGAGAG 
GATACGTTGC CTCTAACTCC AAGGATGATC CAGCTAAGGG TGCCGCCAAC 
TTCACCTCCC AGGTCATCAT CATGAACCAC CCTGGTCAGA TTGGTAACGG 
TTACGCCCCA GTTCTCGATT GCCACACCTC TCACATTGCA GTCAAGTTCT 
CTGAGATCTT GACCAAGATT GACAGGCGTT CTGGTAAGGA GATTGAGAAG 
GAGCCCAAGT TTTTGAAGAA TGGTGACGCT GGTATGGTTA AGATGACCCC 
AACCAAGCCC ATGGTTGTTG AGACTTTCTC CGAGTACCCA CCTTTGGGAC 
GTTTCGCTGT TAGGGACATG AGGCAGACCG TTGCTGTTGG TGTTATTAAG 
AGCGTGGACA AGAAGGACCC AACTGGAGCC AAGGTCACCA AGGCTGCAGT 
GAAGAAGGGT GCCAAATGAT GAGACTTTCG TTATGATCGA CTCTCTTATG 
GTTTTCTTTG GTTCTTAAAA CTTTGATGGC GTTTGAGCCT TTTTCTTTTT 
TCTCTTTATT TCTGTGACTT TCTCTCTCCC TCCTTTTTGG ATATCTCTGA 
GACTTTTTAT TATGGTTTTC AATTATGCAG TTTCCGGATA ATTTTGCTTC 
AAAAAAAAAA

Gene models with high sequence identity

  1. AT5G60390.1 [+] show detail - GTP binding Elongation factor Tu family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
FPrintScan Protein synthesis factor, GTP-binding 1.8e-23
FPrintScan Protein synthesis factor, GTP-binding 1.8e-23
FPrintScan Protein synthesis factor, GTP-binding 1.8e-23
FPrintScan Protein synthesis factor, GTP-binding 1.8e-23
FPrintScan Protein synthesis factor, GTP-binding 1.8e-23
HMMPfam Protein synthesis factor, GTP-binding 2.5e-55
HMMPfam Translation elongation factor EFTu/EF1A, C-terminal 1.6e-32
HMMPfam Translation elongation factor EFTu/EF1A, domain 2 6.9e-16
HMMPanther ELONGATION FACTOR 1-ALPHA (EF-1-ALPHA) 0
HMMPanther TRANSLATION FACTOR 0
BlastProDom Q46515_DESMO_Q46515; 2e-06
superfamily P-loop containing nucleoside triphosphate hyd 2.6e-84
superfamily Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal 2.4e-41
superfamily Translation elongation/initiation factor/Ribosomal, beta-barrel 1.6e-32
PatternScan Protein synthesis factor, GTP-binding 0
HMMTigr Translation elongation factor EF1A, eukaryotic/archaeal 7.4e-292
Gene3D no description 8.1e-58
Gene3D no description 9.6e-31
Gene3D no description 3.5e-45

See the detailed result >

AT5G60390.1

Model type
Protein coding
Short Description
GTP binding Elongation factor Tu family protein
Computational Description
GTP binding Elongation factor Tu family protein; FUNCTIONS IN: calmodulin binding, translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: mitochondrion, nucleus, plasma membrane, vacuole, cytoplasm; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, seed development stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000), Translation elongation factor EF1A, eukaryotic/archaeal (InterPro:IPR004539); BEST Arabidopsis thaliana protein match is: GTP binding Elongation factor Tu family protein (TAIR:AT1G07940.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-16-E22 introduced

  • F11051 - Specific phenotypes were NOT observed.
  • F17532 - Specific phenotypes were NOT observed.
  • F18727 - Specific phenotypes were NOT observed.
  • F21339 - Specific phenotypes were NOT observed.
  • F23214 - Specific phenotypes were NOT observed.
  • F26706 - Specific phenotypes were NOT observed.
  • F27631 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

12 mutant lines found