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  3. RAFL05-16-F22

RAFL05-16-F22

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01298)

full reading [+] show sequence

Nucleotide sequence: RAFL05-16-F22 - full reading 
AACTTAAGTG TTTCTGTTTA ACTCCTTGAG AGAAAATAAC TTTTAAACTT 
TAGCTTCTAA GAGATATTCA GGATGACCGG AGGAGGATTT GCGACTTCGG 
CGAACGGAGT AGAGTTTGAG GCAAAGATAA CTCCAATAGT CATCATATCT 
TGCATCATGG CTGCTACCGG CGGCCTCATG TTTGGTTACG ACGTCGGTGT 
CTCCGGCGGA GTGACATCGA TGCCGGACTT TCTCGAAAAG TTTTTTCCCG 
TGGTTTATCG GAAAGTAGTA GCTGGCGCCG ACAAAGACAG CAACTACTGC 
AAATACGACA ACCAAGGACT ACAACTTTTC ACATCATCTT TATACTTAGC 
CGGTCTAACC GCAACGTTCT TTGCTTCATA CACGACAAGA ACGCTCGGAA 
GGAGGCTAAC TATGCTCATA GCCGGCGTTT TCTTCATCAT AGGTGTGGCT 
CTCAACGCGG GGGCTCAAGA CCTAGCCATG CTTATTGCAG GCAGGATATT 
GCTTGGTTGT GGAGTTGGGT TCGCTAATCA AGCCGTTCCG TTGTTCTTGT 
CGGAGATTGC ACCTACTAGG ATCCGTGGTG GTCTTAATAT TCTCTTTCAG 
CTTAACGTCA CTATTGGTAT CCTCTTCGCC AATCTTGTCA ACTATGGGAC 
CGCCAAGATT AAAGGAGGTT GGGGATGGAG GTTATCGTTA GGTTTGGCGG 
GAATTCCCGC GCTTCTTCTA ACGGTCGGAG CTTTATTGGT GACAGAGACA 
CCAAACAGTT TAGTCGAAAG AGGTCGTCTC GATGAAGGTA AAGCTGTTCT 
TCGTCGTATT CGAGGGACCG ATAATGTTGA ACCAGAGTTC GCTGATCTCC 
TTGAAGCTAG TCGACTTGCT AAAGAAGTTA AACACCCTTT TAGAAACCTT 
CTTCAACGTA GAAACCGTCC TCAGCTCGTC ATCGCCGTCG CTTTACAGAT 
TTTCCAGCAA TGTACTGGAA TCAACGCGAT TATGTTCTAC GCGCCTGTTC 
TGTTCAGCAC ATTAGGGTAT GGTAGTGACG CTTCACTTTA CTCAGCAGTG 
GTGACCGGAG CAGTCAACGT CCTCTCAACT TTAGTCTCAA TCTACTCCGT 
TGACTAAGTC GGTCGCCGAG TTCTTCTCCT AGAAGCTGGT GTCCAAATGT 
TCTTCTCTCA AGTCGTAATC GCCATTATCC TTGGCGTCAA AGTAACAGAC 
ACTTCTACAA ATCTCTCCAA AGGTTTCGCA ATTCTAGTCG TGGTAATGAT 
CTGCACATAC GTCGCTGCTT TCGCCTGGTC TTGGGGACCG CTCGGGTGGT 
TAATCCCTAG TGAGACATTC CCTCTAGAGA CACGTTCCGC GGGACAAAGT 
GTAACGGTCT GCGTTAACTT GCTCTTCACG TTCATTATCG CTCAAGCTTT 
CCTCTCTATG CTTTGCCATT TCAAGTTTGG GATATTCATC TTCTTTTCTG 
CATGGGTTTT GATTATGTCT GTCTTTGTGA TGTTCCTACT TCCGGAGACT 
AAGAATATTC CTATCGAGGA GATGACTGAG AGAGTTTGGA AGAAGCATTG 
GTTCTGGGCT AGGTTCATGG ATGATCATAA TGATCACGAG TTCGTGAATG 
GTGAGAAGAG TAATGGTAAA TCTAATGGCT TTGATCCTTC AACACGGCTT 
TAAAGTGGTT TAAGAGTCCC TAACCAAAGT AGAAGCAGAA GAGAGTGAAC 
AAGAGGTGGT AAACACACCA AAGTGGAGAA GGGAAATACA GTTTTCAATT 
CTATACAGTG TACTAAATTT CGTTACTTTA AGTTTGAACT GCGTTTGTGA 
ATAAGTGAAG TTTTTTTTTT TGCTTT

Gene models with high sequence identity

  1. AT5G26340.1 [+] show detail - Major facilitator superfamily protein
    E-value: 0; Score: 99.84

 

InterPro Scan Digest

Program Description E-value
superfamily Major facilitator superfamily, general substrate transporter 1.4e-39
superfamily Major facilitator superfamily, general substrate transporter 9.8e-10
HMMPfam General substrate transporter 5.6e-85
HMMPfam General substrate transporter 5.3e-31
FPrintScan Sugar/inositol transporter 2.9e-15
FPrintScan Sugar/inositol transporter 2.9e-15
FPrintScan Sugar/inositol transporter 2.9e-15
FPrintScan Sugar/inositol transporter 2.8e-11
FPrintScan Sugar/inositol transporter 2.8e-11
ProfileScan MFS 30.264
ProfileScan MFS 16.673
HMMPanther HEXOSE CARRIER PROTEIN 1.4e-25
HMMPanther SUGAR TRANSPORTER 1.4e-25
HMMPanther MONOSACCHARIDE TRANSPORTER, PLANT 4.2e-217
HMMPanther SUGAR TRANSPORTER 4.2e-217

See the detailed result >

AT5G26340.1

Model type
Protein coding
Short Description
Major facilitator superfamily protein
Curator Summary
Encodes a protein with high affinity, hexose-specific/H+ symporter activity. The activity of the transporter appears to be negatively regulated by phosphorylation. Importantly, microarray analysis, as well as the study of the expression of this gene in mutants involved in programmed cell death (PCD) demonstrated a tight correlation between this gene's expression and PCD.
Computational Description
MSS1; FUNCTIONS IN: carbohydrate transmembrane transporter activity, high-affinity hydrogen:glucose symporter activity, sugar:hydrogen symporter activity, hexose:hydrogen symporter activity; INVOLVED IN: response to salt stress, apoptosis, phosphorylation; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sugar transporter protein 7 (TAIR:AT4G02050.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-16-F22 introduced

  • F21434 - Specific phenotypes were NOT observed.
  • F28013 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found