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RAFL05-16-G20

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02683)

full reading [+] show sequence

Nucleotide sequence: RAFL05-16-G20 - full reading 
GAGATGTCAT CTTCTGAAAC AGGGGAAGTT GCAGAGAATC TAGCGAGACC 
AATGGCTACT CTGGTCTCGT CTCAAACTTA CATCTACCAT TGTCATATTA 
GTAAACAAGC TCTTTATCAG GCAAAAGAAT CATACTCTCA TCGTAGAATT 
TCCCGTCATA ATCACAGAGA AAGACTCGAT TTTTCTCATA GAAACCATAG 
ATTGACAATA ACTAGAAAGC AGCAACCTTT GTCTTTCAAC ACCGTGTGTT 
TTGCCGCAGA CGAGCCCTCC GAAATCAGTG CTGATGCTAG AATCCGTAGT 
GAGGTTCTGT CTCCGTTCAG ATCAGTCCGT ATGTTCTTCT ACCTCGCCTT 
TATAGCAAGC GGTTCATTAG GAGAACTAAT AGCCACTTCT AGGCTCATAG 
GTACCCTGGC GAATCCGGCT AGATCAGGTG AAGTTCTTGA GATCGTTAAG 
GGTTTGGGAG TTGACATTGG TGCTGCTTCT CTCTTTGCGT TCCTATACTT 
CAACGAAAAC AAGACCAAGA ACGCGCAAAT GGCTAGGCTC TCGAGGGAAG 
AGAATCTTGG CAAACTCAAA ATGAGAGTCG AAGAGAACAA TAAGGTAATC 
TCCGTAGGTG ATCTGAGAGG GGTTGCTAGG CTTGTGATCT GTGCTGGTCC 
TGCGGAGTTT ATTGAAGAAG CGTTTAAGAG AAGTAAAGAG TATACACAAG 
GGCTCGTGGA GAGAGGTGTG GTTGTGGTGG CTTATGCTAC GGATGGGAAT 
TCACCGGTTT TGGAGTTTGA TGAAACTGAC ATTGCGGATG AAGAAATGAG 
CCAGAGAAGG AAGAAACTGT GGCGGGTGAC TCCGGTTTTT GTCCCGGAAT 
GGGAAAAGTG GTTAAATGAG CAGAAGAAGC TTGCCAATGT TTCCTCAGAC 
TCTCCAGTGT ATTTGTCTCT GCGTTTGGAT GGGCGTGTAA GGGCAAGTGG 
AGTGGGTTAT CCTCCATGGC AAGCCTTCGT TGCACAGCTT CCTCCGGTTA 
AGGGAATGTG GACCGGTCTT CTTGACGGTA TGGATGGTAG AGTGTAAATA 
CTCTAATACT TAGGGATAAA GTCATATGTT TTTTAGTCTC CTATAAATTT 
TATAAAATGT ATAGTTATGA AAAGATTTTG ACTTCAAAAT TATTATTTCC

Gene models with high sequence identity

  1. AT4G28740.1 [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: ch...
    E-value: 0; Score: 99.83

 

InterPro Scan Digest

See the detailed result >

AT4G28740.1

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3493 (InterPro:IPR021883); BEST Arabidopsis thaliana protein match is: tetratricopeptide repeat (TPR)-containing protein (TAIR:AT1G02910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-16-G20 introduced

  • F07934 - Specific phenotypes were NOT observed.
  • F19113 - Specific phenotypes were NOT observed.
  • F27623 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

3 mutant lines found