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  3. RAFL05-16-H03

RAFL05-16-H03

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07353)

full reading [+] show sequence

Nucleotide sequence: RAFL05-16-H03 - full reading 
ATCCATCTCT CAAACACCAT TTTTGGAAAC ACCATTTCAT ATTCCTTAAA 
CTTTTCCATT TTAGTATCAT TTCATATTCA TTGATATGGA TGTCTCCAAC 
ACGATGCTCC TTGTAGCTGT TGTTGCAGCT TACTGGCTAT GGTTCCAGCG 
GATCTCAAGG TGGCTAAAGG GTCCACGTGT TTGGCCAGTT TTGGGCAGTC 
TTCCGGGTCT GATCGAGCAG CGTGACCGTA TGCACGACTG GATCACTGAG 
AACCTCCGTG CGTGTGGCGG CACTTATCAG ACATGTATCT GCGCCGTACC 
TTTCTTGGCA AAAAAGCAAG GTCTCGTGAC CGTCACGTGC GATCCCAAGA 
ACATCGAACA CATGCTCAAG ACCAGGTTCG ACAACTACCC TAAAGGTCCT 
ACGTGGCAAG CCGTGTTCCA TGACTTCCTC GGCCAAGGTA TCTTCAACTC 
CGACGGTGAC ACTTGGCTCT TCCAGCGTAA AACCGCCGCT CTTGAATTCA 
CCACCAGGAC GTTGAGGCAA GCGATGGGTC GGTGGGTGAA CCGGGGAATC 
AAGCTCCGGT TTTGTCCAAT TCTCGAAACG GCTCAGAACA ATTACGAGCC 
GGTTGATCTC CAAGACTTAA TACTACGGCT CACATTCGAC AACATTTGCG 
GTTTAGCATT CGGTAAAGAC ACTCGAACCT GCGCACCGGG ACTTCCCGAG 
AACGGTTTCG CCTCGGCTTT CGACCGAGCC ACCGAAGCTT CTCTCCAGCG 
GTTTATTCTA CCAGAGTTTC TATGGAGGCT GAAGAAATGG CTTGGACTCG 
GCTTAGAAGT CAGCTTGAGC CGGAGCCTAG GAGAGATCGA TGGGTATTTA 
GATGCTGTCA TTAATACACG TAAGCAAGAA TTGCTGAGTC AGCGAGAGAG 
TGGGGTCCAG CGTCACGACG ATCTCCTCTC TCGTTTCATG AAGAAGAAAG 
ACCAGTCGTA CAGCGAGACG TTCTTACGAC ACGTGGCGCT TAACTTCATC 
CTAGCTGGAC GTGACACGTC ATCAGTAGCG TTGAGCTGGT TTTTCTGGCT 
CATCACGACG CATCCGACGG TTGAGGATAA GATCGTCCGC GAGATATGCT 
CCGTTCTGAT TGAGACACGT GGAACCGATG TATCGTCGTG GACGGCGGAG 
CCGTTGGAAT TCGATGAGGT CGACCGGTTG GTTTACCTGA AGGCCGCGCT 
CTCTGAGACG TTGAGGCTTT ACCCGTCGGT GCCGGAAGAT TCAAAGCACG 
TCGTGAACGA CGATATCTTA CCGGACGGAA CTTTCGTACC GGCGGGATCG 
TCGGTGACTT ATTCGATCTA CGCGGCGGGG AGGATGAAGA GCACGTGGGG 
AGAGGATTGC TTGGAATTCA AACCGGAGAG GTGGATCTCG CCGGACGATG 
GAAAATTCGT GAATCACGAT CAGTACCGAT TCGTGGCGTT TAACGCCGGA 
CCTAGGATCT GTCTAGGAAA AGATCTAGCG TATCTGCAGA TGAAGACGAT 
CGCGGCGGCG GTTTTACTCA GGCATAGACT AACGGTGGCG CCGGGACACG 
AGGTGGAGCA GAAGATGTCG TTGACTTTGT TCATGAAGAA CGGACTTTTG 
GTCAACGTGC ACAAGAGGGA TTTGGAAGTG ATGATGAAGA GTCTCGTACC 
CAAAGAGAGA AACGACGTCG TTGTTCTTAA CGGAAAATGC AACGGCGGTA 
TCGGTGAAGG CGTCGCCGTT AATGCGGCTG TGGCGGTTGC CGTGTAATGC 
AGCTTCTCGG GTTGATAACA TTTTTATAGT AATTAATACA TACATTTACC 
TTTGGGTTTT GTGATTGTTG TGTAAAACAG TAAAAAAAAT GATTTCGTTG 
TGCTATGTAA ACTTTGTAAG CAAATACTCT TCTTCCTAAA GC

Gene models with high sequence identity

  1. AT4G00360.1 [+] show detail - cytochrome P450, family 86, subfamily A, polypeptide 2
    E-value: 0; Score: 99.95

 

InterPro Scan Digest

Program Description E-value
Gene3D Cytochrome P450 8e-93
HMMPfam Cytochrome P450 1.2e-66
superfamily Cytochrome P450 9.4e-101
FPrintScan Cytochrome P450, E-class, group I 7.6e-12
FPrintScan Cytochrome P450, E-class, group I 7.6e-12
FPrintScan Cytochrome P450, E-class, group I 7.6e-12
FPrintScan Cytochrome P450, E-class, group I 7.6e-12
FPrintScan Cytochrome P450, E-class, group I 7.6e-12
FPrintScan Cytochrome P450, C-terminal 1.4e-11
FPrintScan Cytochrome P450, C-terminal 1.4e-11
FPrintScan Cytochrome P450, C-terminal 1.4e-11
FPrintScan Cytochrome P450, C-terminal 1.4e-11
PatternScan Cytochrome P450, conserved site 0
HMMPanther CYTOCHROME P450, SUBFAMILY 86A, B 5.7e-240
HMMPanther Cytochrome P450 5.7e-240

See the detailed result >

AT4G00360.1

Model type
Protein coding
Short Description
cytochrome P450, family 86, subfamily A, polypeptide 2
Curator Summary
Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed at moderate levels in flowers, leaves, roots and stems.
Computational Description
"cytochrome P450, family 86, subfamily A, polypeptide 2" (CYP86A2); CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 86, subfamily A, polypeptide 4 (TAIR:AT1G01600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-16-H03 introduced

  • F08702 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

17 mutant lines found