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  3. RAFL05-16-H09

RAFL05-16-H09

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07354)

full reading [+] show sequence

Nucleotide sequence: RAFL05-16-H09 - full reading
AACCTAAGAA TCTTCTTGAT ATCACTCAGA AAGAAAAAAA ACAATAAAAA 
CAATAAAATC TCAAACGCGG TTTCTACGAT TTTTGTAGAG TCAAAACCAG
CAATGGTGTT GGTGAGAGTC TAAAAAAAAT CGATCGAAAG CTCAAAAACT
CCATCTTCTT TCCCCCAGGA ACTCACAAAC CCTAGATGAA TTGTTAATCA
TCAATCATCG ATTTCAAGAT TTAGTCTCGA AAGGTTTTAT TTTTTTTTGT
GCTTGCGTCT TAAATGGAGA ATCGTAAAGG AGGAAACTTT AGCGTACCTA
GCTCCGAAGC TTTGACCACG ACGCTTCGTA ATGCGATCCA AGCTTTGGGT
CGTGGTTTCG ATGTTACATC TGATGTTCGG CTTCTTTATT GCAAAGGAGC
TCCTGGGTCA AGACTTGTTC GTATAGAAGA AGGACAAAAC AGAGATCTTG
AGTTGTCTCA TGGGTTTCTT CTTCCTAATG TCCCTGCTGA TATTGACTGT
TCACGCGGCA ACAGTGGCAC ACAAAGAATC TCTGTTTGCA GCTTCCATGA
GATGGCAGAA GAATTCAATG TGAGATCAGG TGTAAAAGGG AACATACCAC
TCGGATGCTT TAACGCAATG TTCAATTACA CGGGTTCTTG GCAAGTAGAT
GCAGCATCCA CTAAATCTCT TGCACTGGTT GGATATTTTA TCCCGCTTTA
TGATGTCAAA TTAGCAAAGC TTACATTGGT TTTGCACAAT GAGATCAGAC
GTGCTGTTCC TTCCTCGTGG GATCCTGCTT CCCTAGCTAG CTTTATTGAA
AATTACGGCA CTCATATTGT AACTTCGGTG ACCATTGGTG GAAGAGATGT
AGTATACATC AGACAACATC AGTCTTCTCC TTTACCAGTA TCTGAAATAG
AAAACTATGT GAATGACATG ATAAAGCACA GATTTCATGA AGCAGAGAGT
CAATCTATTA CCGGCCCCTT GAAATACAAA GACAAGGATA TCACAGTAAT
ATTTAGGCGA AGAGGAGGCG ACGATCTTGA GCAAAGCCAT GCTCGTTGGG
CTGAGACTGT ACCCGCAGCT CCAGACATTA TCAACATGAC TTTTACTCCT
ATTGTTTCTC TCCTTGAAGG TGTGCCTGGT TTACGGCATT TGACTCGTGC
TATCGAACTT TACTTGGAAT ATAAGCCTCC TATTGAAGAT TTACAATACT
TCTTGGATTA CCAAATAGCT CGAGCTTGGG CTCCCGAACA GAGTAACCTC
CAACGTAAAG AACCTGTGTG TTCTTCTCTT CAATTCAGCT TAATGGGTCC
CAAACTATTC ATCAGCGCTG ATCAGGTAAC TGTTGGGCGT AAGCCGGTCA
CAGGTCTCAG ACTGAGCTTA GAAGGAAGCA AACAAAACCG TCTCTCTATC
CATTTACAAC ACTTAGTCTC TCTCCCTAAA ATCCTGCAGC CACATTGGGA
CTCTCACGTG CCAATAGGTG CACCGAAATG GCAAGGACCA GAGGAGCAAG
ATAGCCGCTG GTTCGAGCCA ATCAAATGGA AGAACTTCTC TCACGTAAGC
ACCTCACCTA TCGAACACAC AGAGACCCAC ATCGGCGATC TCTCCGGCGT
TCACATTGTC ACTGGAGCTC AGCTCGGGGT TTGGGATTTC GGATCAAAAA
ACGTTTTGCA TTTGAAACTA CTCTTCTCTA AAGTCCCCGG TTGTACAATA
AGAAGGTCCG TCTGGGACCA CACTCCCGTT GCTTCCTCAG GGAGACTGGA
ACCGGGAGGT CCATCTACAT CAAGTTCGAC CGAGGAAGTG TCAGGGCAAT
CAGGAAAACT GGCCAAGATT GTGGATTCGT CAGAGATGTT AAAAGGACCA
CAGGATTTAC CTGGACATTG GCTTGTCACT GGAGCAAAGC TAGGCGTTGA
AAAGGGTAAG ATTGTATTGC GTGTGAAGTA TTCGTTGCTA AATTATTGAG
AGATTTTAGA TGAGTTCTTG TTTTTCCGGC GGCCGGGAAA GTTTTCCGTC
AGCATTCTTT GCACAGCGAA TCATTCTTGT ACATGTTTCG GTTGCTTATG
GGAACCGTTT GGTTCTGTTC GGTTTGACAC GAGTTTGGTT TGGTTGATTT
TTAATTTTGG TCCGGTTTGG TTTTGTAGAC GATTTTATTA AATCAGAGCT
GTAAATTTGT AGTGGGATAT TCAGC

Gene models with high sequence identity

  1. AT1G29690.1 [+] show detail - MAC/Perforin domain-containing protein
    E-value: 0; Score: 99.95

 

InterPro Scan Digest

Program Description E-value
HMMPfam Membrane attack complex component/perforin (MACPF) domain 5.80000000000004e-24
ProfileScan Membrane attack complex component/perforin (MACPF) domain 0

See the detailed result >

AT1G29690.1

Model type
Protein coding
Short Description
MAC/Perforin domain-containing protein
Curator Summary
Encodes a protein containing a domain with significant homology to the MACPF (membrane attack complex and perforin) domain of complements and perforin proteins that are involved in innate immunity in animals. Transgenic cad1-1 mutant plants show lesions seen in the hypersensitive response, as well as a spontaneous activation of expression of pathogenesis-related genes and leading to a 32-fold increase in salicylic acid (SA). CAD1 is postulated to act as a negative regulator controlling SA-mediated pathway of programmed cell death in plant immunity.
Computational Description
constitutively activated cell death 1 (CAD1); CONTAINS InterPro DOMAIN/s: Membrane attack complex component/perforin (MACPF) domain (InterPro:IPR020864); BEST Arabidopsis thaliana protein match is: MAC/Perforin domain-containing protein (TAIR:AT4G24290.2); Has 226 Blast hits to 225 proteins in 30 species: Archae - 0; Bacteria - 6; Metazoa - 14; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-16-H09 introduced

  • F09618 - Specific phenotypes were NOT observed.
  • F16526 - Specific phenotypes were NOT observed.
  • F19932 - Specific phenotypes were NOT observed.
  • F20607 - Specific phenotypes were NOT observed.
  • F25827 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found