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  3. RAFL05-16-H14

RAFL05-16-H14

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02686)

full reading [+] show sequence

Nucleotide sequence: RAFL05-16-H14 - full reading 
ATTTTTCTCT TGCAAAGACC TCTCAGCAGC CAACGACAGT TATCAAAGCT 
TAAGCCGTTT TAGGGTTTTA TCCTTTTGCT GAGATCCAAT CATGGCGGAT 
GTTGAACCAG AGGTTGCTGC TGCTGGAGTT CCCAAGAAGA GGACGTTTAA 
GAAGTTTGCC TTCAAAGGAG TTGATCTCGA TGCTCTTCTC GATATGTCTA 
CTGATGATCT TGTCAAGCTC TTCTCTTCTC GTATTCGTAG AAGGTTCTCT 
AGAGGTTTGA CAAGGAAGCC AATGGCTCTG ATTAAGAAGC TGAGGAAAGC 
GAAAAGGGAG GCACCACAAG GTGAGAAGCC AGAACCAGTG AGAACCCACT 
TGAGGAACAT GATCATCGTC CCTGAAATGA TTGGAAGCAT CATTGGAGTG 
TACAACGGAA AGACTTTCAA CCAGGTTGAG ATCAAGCCTG AGATGATTGG 
TCACTACCTG GCTGAGTTCT CTATCTCATA CAAGCCGGTC AAGCACGGTA 
GGCCTGGTGT TGGTGCTACC CACTCTTCCA GATTCATTCC CCTTAAGTGA 
AAAGCTTCTA TTGGGGAATG TGTTTACTTG CTCGTTATAT GTGGATCTAA 
GTACGTGGAT CTCTTATGTT TTTGAAGCTT TATAATGACA TTACTTTAGA 
AGCTTTCTCA ACTCTAGCTC TTGCGTTTTC ATTATCATGT TACAAGAGGA 
TCTTAAATCA AATCATTTTG GATTTTTGT

Gene models with high sequence identity

  1. AT1G04270.1 [+] show detail - cytosolic ribosomal protein S15
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMTigr Ribosomal protein S15, eukaryotic/archaeal 1.8e-95
HMMPfam Ribosomal protein S19/S15 9.6e-35
HMMPanther Ribosomal protein S15, eukaryotic/archaeal 1.3e-113
HMMPanther Ribosomal protein S19/S15 1.3e-113
superfamily Ribosomal protein S19/S15 1.7e-29
PatternScan Ribosomal protein S19 conserved site 0
HMMPIR Ribosomal protein S19/S15 1.9e-73
FPrintScan Ribosomal protein S19/S15 7.5e-13
FPrintScan Ribosomal protein S19/S15 7.5e-13
FPrintScan Ribosomal protein S19/S15 7.5e-13
Gene3D Ribosomal protein S19/S15 3.3e-27

See the detailed result >

AT1G04270.1

Model type
Protein coding
Short Description
cytosolic ribosomal protein S15
Curator Summary
Encodes cytosolic ribosomal protein S15.
Computational Description
cytosolic ribosomal protein S15 (RPS15); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S15, eukaryotic/archaeal (InterPro:IPR005713), Ribosomal protein S19/S15 (InterPro:IPR002222), Ribosomal protein S19 conserved site (InterPro:IPR020934); BEST Arabidopsis thaliana protein match is: Ribosomal protein S19 family protein (TAIR:AT5G09510.1); Has 8033 Blast hits to 8033 proteins in 2978 species: Archae - 257; Bacteria - 3802; Metazoa - 279; Fungi - 238; Plants - 1557; Viruses - 0; Other Eukaryotes - 1900 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-16-H14 introduced

  • F02339 - Specific phenotypes were NOT observed.
  • F14038 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

2 mutant lines found