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  3. RAFL05-16-I21

RAFL05-16-I21

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02689)

full reading [+] show sequence

Nucleotide sequence: RAFL05-16-I21 - full reading 
GCCTTTGTCT CTCATTCTTC TTCTCCATTT CGAAAAGAAG ATGAAGGTGA 
TAGATAAGAT CCAGTCATTA GCCGACGAAG GCAAAACAGC GTTTTCCTTC 
GAATTCTTCC CACCAAAGAC AGAAGATGGA GTCGACAATC TCTTTGAGAG 
AATGGATCGA ATGGTTGCTT ATGGTCCAAC GTTTTGCGAT ATCACTTGGG 
GAGCTGGTGG ATCTACCGCA GATCTAACGC TTGATATAGC TTCGAGGATG 
CAAAACGTTG TTTGTGTTGA GAGTATGATG CATCTTACGT GTACTAACAT 
GCCTGTTGAG AAGATTGATC ATGCTCTTGA GACTATTAGA TCTAATGGGA 
TTCAGAATGT GCTTGCTCTT AGAGGTGATC CTCCTCATGG TCAAGATAAG 
TTTGTTCAGG TTGAAGGTGG TTTTGATTGT GCTTTGGATC TTGTTAATCA 
CATTCGTAGC AAGTATGGTG ATTACTTTGG TATCACTGTC GCTGGTTATC 
CTGAGGCGCA TCCTGATGTT ATTGGTGAGA ATGGTCTTGC GTCTAATGAA 
GCTTATCAGA GTGATCTTGA GTATCTGAAG AAAAAGATTG ATGCTGGAGC 
TGATCTGATT GTTACTCAGC TTTTCTATGA TACTGATATA TTCCTCAAGT 
TTGTGAATGA TTGTCGGCAA ATTGGGATTA GTTGTCCCAT TGTTCCTGGA 
ATTATGCCTA TTAATAACTA CAGAGGCTTT TTGCGTATGA CTGGTTTCTG 
CAAGACTAAG ATACCAGTTG AGGTGATGGC TGCCTTGGAG CCTATCAAGG 
ATAACGAAGA AGCTGTGAAA GCCTATGGTA TTCACCTTGG AACAGAGATG 
TGTAAAAAGA TGTTGGCTCA TGGAGTCAAG TCTCTTCATC TCTACACATT 
GAACATGGAG AAATCTGCTC TTGCAATATT GATGAATCTT GGTATGATTG 
ATGAGTCCAA AATTTCTCGT TCTTTACCCT GGAGACGCCC TGCAAATGTT 
TTCCGTACTA AGGAAGATGT GCGCCCCATT TTCTGGGCAA ACCGTCCAAA 
GAGCTACATT TCTAGAACCA AGGGCTGGGA AGATTTCCCA CAAGGCCGGT 
GGGGTGATTC ACGCAGTGCT TCATATGGTG CACTCTCGGA TCATCAGTTC 
TCACGTCCGC GAGCACGTGA CAAGAAGCTT CAACAAGAAT GGGTTGTCCC 
ACTGAAAAGT GTTGAAGATA TTCAGGAGAA ATTCAAGGAG CTCTGCCTTG 
GAAACCTTAA AAGCAGTCCC TGGTCTGAAT TAGATGGACT CCAGCCAGAG 
ACAAGGATAA TAAACGAGCA ACTGATAAAA GTCAACTCCA AAGGCTTCTT 
GACCATCAAT AGCCAACCAT CAGTCAACGC CGAGAGATCT GATTCCCCAA 
CTGTTGGATG GGGAGGTCCT GTTGGATATG TATACCAAAA GGCTTATCTA 
GAGTTCTTCT GCTCAAAGGA GAAATTAGAT GCAGTGGTGG AGAAATGCAA 
AGCTTTGCCA TCGATTACTT ACATGGCTGT GAACAAAGGA GAACAGTGGG 
TATCGAACAC TGCCCAAGCT GATGTGAATG CTGTAACTTG GGGAGTTTTC 
CCGGCTAAGG AAATCATTCA ACCAACCATT GTCGATCCCG CTAGCTTCAA 
CGTCTGGAAG GATGAAGCAT TTGAGACTTG GTCAAGAAGC TGGGCTAACT 
TGTACCCAGA AGCCGACCCT TCCAGAAACT TGCTCGAGGA GGTGAAGAAC 
AGCTACTATT TGGTAAGCTT GGTGGAGAAC GATTACATCA ATGGTGACAT 
ATTCGCGGTG TTTGCTGATC TTTGAGAAAA TCAAGAGACA ACTACAGTAT 
ATCGGTTTCC TACTGCTTTC AAGATTTGCT TTTGTACTTT CTCTAAAATA 
TTGGGATTTT GTTTTCT

Gene models with high sequence identity

  1. AT2G44160.1 [+] show detail - methylenetetrahydrofolate reductase 2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMTigr Eukaryotic-type methylenetetrahydrofolate reductase 2e-238
Gene3D no description 3.3e-97
HMMPfam Methylenetetrahydrofolate reductase 4.6e-127
superfamily FAD-linked oxidoreductase 1.4e-95
HMMPanther METHYLENETETRAHYDROFOLATE REDUCTASE 2.6e-215
HMMPanther METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRA 2.6e-215

See the detailed result >

AT2G44160.1

Model type
Protein coding
Short Description
methylenetetrahydrofolate reductase 2
Curator Summary
methylenetetrahydrofolate reductase MTHFR2 mRNA, complete
Computational Description
methylenetetrahydrofolate reductase 2 (MTHFR2); FUNCTIONS IN: methylenetetrahydrofolate reductase (NADPH) activity; INVOLVED IN: oxidation reduction, methionine metabolic process; EXPRESSED IN: male gametophyte, guard cell, cultured cell, leaf; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Methylenetetrahydrofolate reductase (InterPro:IPR003171), Eukaryotic-type methylenetetrahydrofolate reductase (InterPro:IPR004621); BEST Arabidopsis thaliana protein match is: methylenetetrahydrofolate reductase 1 (TAIR:AT3G59970.3); Has 4605 Blast hits to 4574 proteins in 1845 species: Archae - 16; Bacteria - 3444; Metazoa - 135; Fungi - 300; Plants - 75; Viruses - 0; Other Eukaryotes - 635 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-16-I21 introduced

  • F29911 - rosette leaf::dark green / rosette leaf::decreased size / rosette leaf::abnormal / rosette leaf::present in fewer numbers in organism / stem::decreased thickness / whole plant::decreased height / sporophyte vegetative stage::decreased speed

Mutant lines with disrupted or induced

1 mutant line founds