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  3. RAFL05-16-J05

RAFL05-16-J05

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03024)

full reading [+] show sequence

Nucleotide sequence: RAFL05-16-J05 - full reading 
CCCGGTAAAT TTTGCCGGCG AAGATTGAAA CTTTTCCAAA CGATGCAAGC 
AACGGCGAAT CTTCCGACGA TATGGAATCT GTCGCTTCGT GGGTCATCCT 
CTAAAGTCCA TATAGTGAAC CCTAGGCATC GAAAGTCTCA CGCGCTTCAT 
TGTTTGAGAT CAGAAGGGCA TGAAGAGTTT GACAATTCTC AGAAAAGTCT 
TGGACAATCT TCTATTACAA AAGAAGCAAA ACATAAGGAC ATATGGAACC 
TCTTTAGAGA AGCTCAAAAA AATATAATGA TCTTAAACAA ACAACGCCTA 
GCTGCAGTTG ACGAGTTAGA ACAGCTAAAG AAAGATAAAG AGGAATTGTT 
AGAGAGGATA AACCAATTGG AGGCAGAAAG TCAGATTGTA ATCAAGAAAG 
ATAAGTCGTC TCTATTCTGG GAGTTGCTTC TCCGTATTGA TTCTATGGTT 
ATCAATGGAC TAGTTAACAT TGAAGAAGCT TCATCCATGA GAAAGCTGGT 
TAAAGAGCAT GAAGCGAACA TCTCTGTATT TCCTCTTGAT GTCCTGCAAC 
AAGGAGATGC CGAAATTCTA GCAGAACTTA GACGGTTCAC AAATAAAGGC 
AAAAGGAATG GTCTCCATGT GATTCATATT TGCACCGAAA TGGCTCCATT 
AGTTTCTGTT GAACCTTTGG CCTCATATAT AACAGGATTG TCTTGTGCAC 
TCCAAGAAGA GGGTTACATG GTTGAAGTTA TATTGCCAAA ATATTCTACA 
CTTGATTTGG ACGAAATTGA AGGGCTTCGT GAAATCGAAG CCGATGCATA 
TTCTTATTTT GATGGCCAGC TGCATGCAAA CCGAATATGG AACGGAGTTG 
TCTCTGGAAT AGGAGTGACA CTTATTCAAC CAGTGTATTA CTCGTCAATG 
TTTAGCCGTG ATAAAGTATA CGGGTATCAG GACGATTTTG ATAGATTTGC 
ATACTTCTCT CGTGCTTCAT TGGATTACAT TGCAAAATCT GGAAAGCAGC 
CTGATGTTTT ACACATTCAC AACTGGCAAA CTGCAATAGT TGGACCGTTG 
TTTTGGGATG TTTTTGTTAA TCAGGGACTT GAAGGTACTA GAATACTCTT 
GACATGCCAA GACTTTGACA AGGGTCTTGT ACCTCCTGAA AAATTGGAGC 
TATGTGGGCT CGATCCAGCT GAACTTCACC GTCTTGATCG CTTACAAGAT 
AACACAAATC CACATTTTGT TAATATTTTG AAGGGCGGTG TTGTCTACTC 
CAACAAAGTT GTAATAATGT CATCCTCACA TAGCTCAATC CCTGGTCTCG 
AACCAACTTT AGCTATCCAC AAGGACAAGT TGTTTTTTGC TCCCTTTGGA 
ATGGACAACT CAATGGAGAA AGACTTGTGT TGTGACCTTC ACGTCTCTGC 
ATATACTTCC ATTAAGAACC TATGAAAATA CACAATGATG AACAAGATGA 
ATGATTATTT ATCATATTTT CACATTAAAA AAAAAAATTG TGAC

Gene models with high sequence identity

  1. AT5G65685.1 [+] show detail - UDP-Glycosyltransferase superfamily protein
    E-value: 0; Score: 99.93

 

InterPro Scan Digest

Program Description E-value
Coil coiled-coil 0
HMMPfam Starch synthase, catalytic domain 8.7e-40
superfamily UDP-Glycosyltransferase/glycogen phosphorylas 6.6e-20

See the detailed result >

AT5G65685.1

Model type
Protein coding
Short Description
UDP-Glycosyltransferase superfamily protein
Computational Description
UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: starch synthase activity; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Starch synthase, catalytic domain (InterPro:IPR013534); BEST Arabidopsis thaliana protein match is: starch synthase 4 (TAIR:AT4G18240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-16-J05 introduced

  • F29549 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

2 mutant lines found