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Full-length cDNAs
RAFL05-16-K10

RAFL05-16-K10

RIKEN Arabidopsis Full-length cDNAs

AACAGAGAAT CACGAAATCA CGACCGCATT AGAGAAGAAA GAGAGAGAGA 
GAGCTTTTCT TCTTCTTCTT CCGCTCACTA GATCTGCTCC CTCTCGCAGT 
CTCCTGGGTT TTGGCAAATT GCTTTTGATT CTTCTCGGGT GGCAGCTATG 
GTTTCCTCCA CCAAACTCAA ATCCGTTGAT TTCTACAGGA AAATTCCGAG 
AGATTTGACG GAGGCATCTC TATCAGGCGC TGGGTTATCA ATTGTAGCTG 
CTCTCTTTAT GATGTTTTTG TTTGGAATGG AGCTGAGTAG TTATTTGGAA 
GTTAACACTA CCACAGCTGT TATAGTTGAC AAGAGCAGTG ATGGTGACTT 
CTTACGCATT GATTTCAACA TCAGTTTTCC TGCTCTTTCC TGTGAATTTG 
CATCCGTTGA TGTGAGCGAT GTCTTGGGAA CGAATAGGTT GAATATAACA 
AAAACAGTTC GCAAGTTTCC AATTGATCCA CATTTAAGGT CCACCGGCGC 
AGAATTCCAC TCTGGCCTTG CATTACATAA CATAAACCAT GGAGAAGAAA 
CTAAGGAAGA GTTTCCTGAT GGTGCTATAC CATTGACCAG TGCTAGTTTT 
GAAGCATTAT CACATCACTT TCCAATATTG GTTGTTAACT TTAATGCACC 
ATGGTGCTAC TGGAGTAATC GTCTGAAACC TTCATGGGAG AAAGCAGCTA 
ATATAATAAA ACAAAGATAT GATCCTGAAG CTGATGGCCG TGTTCTTCTA 
GGAAATGTTG ATTGCACGGA AGAACCTGCG CTATGTAAGA GGAATCACAT 
ACAAGGCTAT CCATCTATTC GTATTTTCCG CAAAGGCAGT GACCTTAGAG 
AGGACCATGG ACACCACGAA CATGAATCTT ACTATGGAGA TCGGGACACA 
GACAGTATAG TTAAGATGGT GGAGGGACTG GTCGCACCTA TCCACCCGGA 
GACTCACAAG GTGGCTTTGG ATGGAAAATC CAATGATACT GTAAAACATC 
TTAAAAAGGG ACCAGTTACA GGAGGTTGTA GAGTTGAAGG TTATGTACGT 
GTAAAGAAGG TTCCAGGAAA TCTCGTGATC TCAGCTCATT CAGGAGCTCA 
TTCATTTGAT TCTTCTCAAA TGAACATGTC GCATGTTGTT TCTCATTTTT 
CGTTTGGGAG GATGATTTCT CCTAGGCTGC TGACCGATAT GAAGCGATTG 
TTGCCATATC TTGGCCTAAG CCATGACAGG CTGGATGGAA AGGCATTCAT 
AAATCAACAT GAGTTTGGTG CCAATGTCAC TATCGAACAC TACCTTCAAA 
CAGTCAAAAC AGAGGTCATT ACAAGAAGAT CCGGTCAAGA ACATTCACTG 
ATAGAGGAAT ATGAATACAC CGCTCACAGC AGCGTGGCTC AGACTTACTA 
CTTACCCGTT GCGAAGTTTC ACTTTGAACT CTCTCCTATG CAGATCTTAA 
TAACCGAAAA CCCGAAGTCC TTCTCACACT TCATCACAAA TCTGTGTGCC 
ATTATTGGTG GTGTTTTCAC GGTTGCCGGA ATACTAGATT CGATTTTTCA 
CAATACAGTA AGACTGGTAA AAAAGGTCGA ACTTGGGAAA AACATTTGAT 
CGTCCACTGG AGGTTAGAAT TTTCCATTAA TATATAAAAC CATAGAAGAA 
CCTCAGACTG TTTACTTTGA ATAGCTGATC TACACAGAAA AACTCAAAAA 
AAGAGAGAAT TTTTGTTTGA CACAATCTTA GTTTCTTTAT GGTTCTTGTT 
CTATTAAAAT CCGCCTGGTT TTTCGT

Gene models with high sequence identity

AT3G20560.1 [+] show detail - PDI-like 5-3
E-value: 0; Score: 99.94

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Protein of unknown function DUF1692	3.4e-27
HMMPfam	Thioredoxin domain	0.00000000000013
HMMPanther	THIOREDOXIN DOMAIN-CONTAINING	1.2e-303
HMMPanther	SEROLOGICALLY DEFINED BREAST CANCER ANTIGEN N	1.2e-303
ProfileScan	Thioredoxin-like	10.271
superfamily	Thioredoxin-like fold	2e-24
Gene3D	Thioredoxin fold	3.8e-18

See the detailed result >

AT3G20560.1

Model type: Protein coding
Short Description: PDI-like 5-3
Curator Summary: Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Unlike several other PDI family members, transcript levels for this gene are not up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin).
Computational Description: PDI-like 5-3 (PDIL5-3); FUNCTIONS IN: protein disulfide isomerase activity; INVOLVED IN: cell redox homeostasis; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336), Protein of unknown function DUF1692 (InterPro:IPR012936); BEST Arabidopsis thaliana protein match is: Thioredoxin protein with domain of unknown function (DUF1692) (TAIR:AT1G50950.1); Has 5147 Blast hits to 3670 proteins in 375 species: Archae - 8; Bacteria - 112; Metazoa - 2494; Fungi - 904; Plants - 886; Viruses - 3; Other Eukaryotes - 740 (source: NCBI BLink).
Link: InterPro Scan - TAIR

Mutant lines with RAFL05-16-K10 introduced

F15343 - seed::increased size
F18509 - rosette leaf::increased size / rosette leaf::present in greater numbers in organism / rosette leaf::abnormal / stem internode::decreased length / rosette leaf::desaturated green

Mutant lines with disrupted or induced

2 mutant lines found