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  3. RAFL05-16-K16

RAFL05-16-K16

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07362)

full reading [+] show sequence

Nucleotide sequence: RAFL05-16-K16 - full reading 
AGTAATCCAT TTGCTGCTCT GTAGTGGAAG TAGTTGTTGT TGTTGTTGCA 
GAAGAATCCG AATCCAATTC AATGAGTCTT CTTCGTCTTC TCCTCGTTGT 
TGTTGTTCTT CATCTTTCTG CGGTGGCCGG CGACGACGCC ATCGTCTCCA 
GATTCCAGGA GTACCTCCGA ATCAACACGG TTCAGCCCAA CCCGGAATAC 
TACAAAGCCG TTGACTTTAT AATATCTCAG GCGAAACCAC TGTCCCTCGA 
ATCTCAGACG ATCGAATTTG TAAAAGGAAA GCCGCTTCTC CTCCTCAAAT 
GGGTTGGCTC CGACCCAACC CTACCTGCCT TTCTCCTCAA CTCCCACACC 
GATGTCGTTC CCTTCGAGGA CTCCAAGTGG ACTCACCATC CGCTCCAAGC 
TCACATGGAC CACCATGGCG ACATCTATGC CAGGGGTTCC CAGGACATGA 
AGTGCGTCGG GATGCAGTAC CTCGAGGCCA TACGCAAGCT CCAGGCTTCT 
GGCTTCAAGC CACTCCGATC CGTCTATCTC TCCTTCGTCC CCGATGAAGA 
GATTGGCGGC CACGATGGCG CAGAGAAGTT TGCTGAATCC CAATTATTCA 
AGAGCTTGAA CATCGCAATC GTGCTCGACG AAGGCCTGCC ATCGCCTACT 
GAGAGTTACA GAGTATTCTA TGGAGAGAGG AGTCCCTGGT GGCTGGTGAT 
TAAGGCTAAA GGTCCACCTG GCCACGGTGC CAAGCTCTAT GACAACTCTG 
CCATGGAGAA TCTGCTCAAA AGCATTGAGA GTATTCGCAG ATTCAGAGCT 
TCTCAGTTCG ATCTTCTCAA AGCTGGTGGG ATAGCTGAAG GCGATGTTGT 
CTCTGTGAAC ATGGCCTTCC TCAAGGCTGG CACACCTTCT CCAACTGGTT 
TCGTAATGAA TCTGCAACCA TCTGAGGCAG AAGCTGGTTT CGACATTCGT 
GTTCCACCCA GCGTTGATGC TGAAGCACTC GAAAGACGTT TAGTGGAGGA 
ATGGGCTCCA GCAGCACGAA ACATGTCCTT TGAGTTCAAG CAGAAGCTTA 
CGGGGAAGCA ATTCCTTACA GCAGCAGATG ATTCAAATCC TTGGTGGGGG 
CTCTTGGAAA ATGCTGTTAA GGAAGCCGGA GGTAGGACCA GTAAGCCTGA 
GATTTTCCCT GCATCAACGG ATGCTCGCTA CTTTCGCAAG GCTGGCGTGC 
CTGCCTTTGG GTTCTCTCCC ATATCAAACA CCCCGAGTCT GCTTCATGAC 
CACAATGAGT ATTTGGGTAA AGCTGAGTAC TTGAAAGGCA TTGAGGTGTA 
TGTTTCAATC ATCAAAGCTT ATGCATCATA TGAAAGCAAA AGTGGTTCAC 
GAGATGAGTT ATGAGGGTCT CAACACAGCC CATTCAAGTC TTCCTTTCGC 
AAATTTGTAC AATCAATAAG ATCTGAATCC ATCCTGTGTT TGTTGTGGTA 
AATCAGAGAC ATCTTGTTCT TGTTGTGAGA CAGTTGGCAT TGGCAAATTG 
TATTATTCAT TCCTGCTTTT TCAATGCTTC TTCTTTTTTC TC

Gene models with high sequence identity

  1. AT4G38220.1 [+] show detail - Peptidase M20/M25/M40 family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D no description 1.2e-51
HMMPIR N-acyl-L-amino-acid amidohydrolase 2.7e-299
PatternScan ArgE/DapE/ACY1/CPG2/YscS, conserved site 0
superfamily Zn-dependent exopeptidases 1.8e-72
superfamily Peptidase M20, dimerisation 1.2e-06
HMMPanther AMINOACYLASE-1 8.3e-212
HMMPanther PEPTIDASE M20 FAMILY MEMBER 8.3e-212
HMMPfam Peptidase M20 5.9e-35
HMMPfam Peptidase M20, dimerisation 8.9e-05
HMMTigr N-acyl-L-amino-acid amidohydrolase 0

See the detailed result >

AT4G38220.1

Model type
Protein coding
Short Description
Peptidase M20/M25/M40 family protein
Computational Description
Peptidase M20/M25/M40 family protein; FUNCTIONS IN: metallopeptidase activity, hydrolase activity, aminoacylase activity; INVOLVED IN: response to zinc ion; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ArgE/DapE/ACY1/CPG2/YscS, conserved site (InterPro:IPR001261), Peptidase M20 (InterPro:IPR002933), N-acyl-L-amino-acid amidohydrolase (InterPro:IPR010159), Peptidase M20, dimerisation (InterPro:IPR011650); BEST Arabidopsis thaliana protein match is: Peptidase M20/M25/M40 family protein (TAIR:AT1G44820.1); Has 7635 Blast hits to 7629 proteins in 1864 species: Archae - 183; Bacteria - 5555; Metazoa - 388; Fungi - 290; Plants - 78; Viruses - 2; Other Eukaryotes - 1139 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-16-K16 introduced

  • F13722 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found