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  3. RAFL05-16-L12

RAFL05-16-L12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07364)

full reading [+] show sequence

Nucleotide sequence: RAFL05-16-L12 - full reading 
CACCACTACA ACCACCGCAA CAACCACCAA AAACCCTCTC AAAGAAATTT 
CTTTTTTTTC TTACTTTCTT GGTTTGTCAA ATATGGTCAG CCATCCAATG 
GAGAAAGCTG CAAATGGTGC GTCTGCGTTG GAAACGCAGA CGGGTGAGTT 
AGATCAGCCG GAACGGCTTC GTAAGATCAT ATCGGTGTCT TCCATTGCCG 
CCGGTGTACA GTTCGGTTGG GCTTTACAGT TATCTCTGTT GACTCCTTAC 
GTGCAGCTAC TCGGAATCCC ACATAAATGG GCTTCTCTGA TTTGGCTCTG 
TGGTCCAATC TCCGGTATGC TTGTTCAGCC TATCGTCGGT TACCACAGTG 
ACCGTTGCAC CTCAAGATTC GGCCGTCGTC GTCCCTTCAT CGTCGCTGGA 
GCTGGTTTAG TCACCGTTGC TGTTTTCCTT ATCGGTTACG CTGCCGATAT 
AGGTCACAGC ATGGGCGATC AGCTTGACAA ACCGCCGAAA ACGCGAGCCA 
TAGCGATATT CGCTCTCGGG TTTTGGATTC TTGACGTGGC TAACAACACC 
TTACAAGGAC CCTGCAGAGC TTTCTTGGCT GATTTATCAG CAGGGAACGC 
TAAGAAAACG CGAACCGCAA ACGCGTTTTT CTCGTTTTTC ATGGCGGTTG 
GAAACGTTTT GGGTTACGCT GCGGGATCTT ACAGAAATCT CTACAAAGTT 
GTGCCTTTCA CGATGACTGA GTCATGCGAT CTCTACTGCG CAAGCCTCAA 
AACGTGTTTT TTCCTATCCA TAACGCTTCT CCTCATAGTC ACTTTCGTAT 
CTCTCTGTTA CGTGAAGGAG AAGCCATGGA CGCCAGAGCC AACAGCCGAT 
GGAAAAGCCT CCAACGTTCC GTTTTTCGGA GAAATCTTCG GAGCTTTCAA 
GGAACTAAAA AGACCCATGT GGATGCTTCT TATAGTCACT GCACTAAACT 
GGATCGCTTG GTTCCCTTTC CTTCTCTTCG ACACTGATTG GATGGGCCGT 
GAGGTGTACG GAGGAAACTC AGACGCAACC GCAACCGCAG CCTCTAAGAA 
GCTTTACAAC GACGGAGTCA GAGCTGGTGC TTTGGGGCTT ATGCTTAACG 
CTATTGTTCT TGGTTTCATG TCTCTTGGTG TTGAATGGAT TGGTCGGAAA 
TTGGGAGGAG CTAAAAGGCT TTGGGGTATT GTTAACTTCA TCCTCGCCAT 
TTGCTTGGCC ATGACGGTTG TGGTTACGAA ACAAGCTGAG AATCACCGAC 
GAGATCACGG CGGCGCTAAA ACAGGTCCAC CTGGTAACGT CACAGCTGGT 
GCTTTAACTC TCTTCGCCAT CCTCGGTATC CCCCAAGCCA TTACGTTTAG 
CATTCCTTTT GCACTAGCTT CCATATTTTC AACCAATTCC GGTGCCGGCC 
AAGGACTTTC CCTAGGTGTT CTGAATCTAG CCATTGTCGT CCCTCAGATG 
GTAATATCTG TGGGAGGTGG ACCATTCGAC GAACTATTCG GTGGTGGAAA 
CATTCCAGCA TTTGTGTTAG GAGCGATTGC GGCAGCGGTA AGTGGTGTAT 
TGGCGTTGAC GGTGTTGCCT TCACCGCCTC CGGATGCTCC TGCCTTCAAA 
GCTACTATGG GATTTCATTG AATTTTAGCA GTGGTTGTTT GGCTCTCTTT 
CTCTCATAAA ACAGTAGTGT TGTGCAAATC CTACATAAAG AAAAAAGAAA 
AGGAAATTAA ACTCATTGGG TTGGTTTGTA TTTTACCTAA ACCCACGAAG 
TTCCTTTTTC TTTTTGTAAC TCAATTTAAA TTTGGAGTAT ATTTTACT

Gene models with high sequence identity

  1. AT1G22710.1 [+] show detail - sucrose-proton symporter 2
    E-value: 0; Score: 99.94

 

InterPro Scan Digest

Program Description E-value
superfamily Major facilitator superfamily, general substrate transporter 3.8e-27
HMMPanther SUCROSE TRANSPORT 1.5e-231
HMMPanther SUGAR TRANSPORTER 1.5e-231
HMMPfam General substrate transporter 3.8e-11
HMMTigr Sucrose/H+ symporter, plant 1.1e-236

See the detailed result >

AT1G22710.1

Model type
Protein coding
Short Description
sucrose-proton symporter 2
Curator Summary
Encodes for a high-affinity transporter essential for phloem loading and long-distance transport. A major sucrose transporter, AtSUC2 can also transport a wide range of physiological and synthetic glucose conjugates with both α- or β-linkage.
Computational Description
sucrose-proton symporter 2 (SUC2); CONTAINS InterPro DOMAIN/s: Sucrose/H+ symporter, plant (InterPro:IPR005989), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sucrose-proton symporter 1 (TAIR:AT1G71880.1); Has 2329 Blast hits to 2203 proteins in 568 species: Archae - 32; Bacteria - 908; Metazoa - 423; Fungi - 192; Plants - 420; Viruses - 0; Other Eukaryotes - 354 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-16-L12 introduced

  • F26137 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found