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  3. RAFL05-16-N16

RAFL05-16-N16

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17105)

full reading [+] show sequence

Nucleotide sequence: RAFL05-16-N16 - full reading 
GCTTCTACTT TCCTCTTTCC TTTTTAGGGA TTTCACTTTC CTCTTCTCTC 
TCTCTCTCTC TCTGCCTAAC CTCGATTTCT CTCGATCGCT CTTCACCATG 
GATCTACGAT CATGTGGTCC TTCTTGAAGT TTTTTGATCT CTTCTTCTTA 
CGGGTTTTTA CTTCGTTTGA TTTTCCTGTT GTTTGTTGTT CAAGGATCGA 
GATTTCGTGG AGCTCTCTAT TCGCAGCTTG GAGATTGGAC TTGTTTGAAT 
TGGCTCTTTT GTGATGGAGG ATACTCGGTC AGTTGCTTCA CTCATGGACT 
CTACATCATC CAAGATTCAG CAGCTTCAGA AGGCGTTTGC TGAACTTGAA 
AGTCAGCGTG CTGTAACACT TAATCTGAAG TGGAAGGAAC TTGAGGAGCA 
TTTTCATGGG CTTGAGAGGT CTTTGAAGAG AAGGTTTCAT GAGCTTGAAG 
ATCAAGAAAA AGAGTATGAA ACCAAAACAA GGAAAGCTCA AGAACTGTTG 
GAGAAAAAGA AGGCAGCTGT TGAGGCTAAG GAGAAGGCGG CGCTTGAAAG 
GCTTCAGAAG AAGAGAGACG CAGCTATGTT TACTATAAAC AGTGCTTTGG 
ATAAGTATAA CAACGCTCCT GTCAGTAAAC CTTCTGTTGG TGAACGTTGG 
CCACAAAATG CTGTAGAGGA TTCATCCAAT GTCTTTGCTG CTGATAGTAT 
TACCGATGAT AATCCGGATG GTATTGTGCA AGATGTTCAG ATCTCACCTG 
TGATGGGAAA TTATGAGGTG AAGGCTTATC CACAGTTACT GAAACTGTGC 
GGGGATATGG ACTCAACGGG TCTCCATAAG TTTGTATCAG ATAACCGCAA 
GAACCTTGCA TCACTAAAGG AGGAGATTCC TATGGCGTTC AGGGCTGCAG 
CAAACCCAGC CAGCTTAGTG TTGGACTCTT TGGAAGGGTT TTACCCTATG 
GAGGCACCAA CTGCTGATGG AAAAAAAGAC GCTAACCTCT TGGGCATGCG 
CAGAACCTGT ATCATGTTGA TGGAGTGCCT TAGCATACTG TTATCTGGTC 
TGGACCGCAA CTGCCTTGCT GTTGTTCTCT CACAAAATGT TAAGCATAGA 
GCCAAAACTA TTGCAGAAGG ATGGAATCCA CTGCTGGAAT CTCTTGACAT 
GGATGCTTGC AATGGTAATT CTTTGGAGGC TCATGCATTC CTGCAACTGC 
TGGCCACTTT TGCTATTGTT GCTGATTTTA AAGAAGATGA ACTCTTAAAG 
CTGATCCCCA TGGTTTCACG TCGCCGTCAG GCAGCTGAGC TCTGCCGTTC 
ACTTGGATTA GCTGAAAAAA TGCCTGGTGT GATTGAAGTT CTCGTGAACA 
GTGGAAAACA GATTGATGCG GTTAACTTGG CATTTGCGTT TGAACTCACA 
GAACAGTTCT CACCTGTCTC ATTACTGAAA TCTTACTTGA TAGAGGCAAG 
GCGATCTTCC CCCCAAGGCA GACCTGGCAA TGCATCTCCT GCTGTTCAGG 
ATGAGTTCAA TGAGCGGGAG CTTATAGGCC TCAAAACCGT TATAAAGTGT 
ATCGAAGAGC ATAGCCTGGA AGAGCAGTAC CCAGTTGAGC CACTTCACAA 
ACGGATTCTC CAGCTCGAGA AAGCCAAAGC GGACAAAAAG AGAGCAACAG 
AACCCATGAA ACCTCAGCCA AAACGACCAC GTGGTGCTCA ACCCCGAGTC 
ACTGACAACA ACAACAACAT CAACAACAAC AAGACAGGAT ACGGTAGAGT 
CATCCCTGAA AGGTATCCGC AGTATGTCTA TGACAACAGA CCGTTCCTTA 
GCGGTCCAAT CATGGCAGCA CAACCTCCAC CACCTCCTCC TCCTCAGACT 
TACACGTTCA ATCCTGCTCC TGCACATGGG AACTTCTACG CGAACTGCTA 
TCAGTACCAG GCTCCTCCTC CTCCTCCTTA CTTTCACTAG TGATAAAAAA 
AGGTGAATGG TAAAATGTGA CTGTGACTGT GACTCCCCTT TGGTGTTAAC 
TTGTGGCAGC TCTTTTTTAA CTCCTCTCCT TAGTTCTCTT TCCCTTTGAT 
GTTGTTGTTG TGTACGGATG GTTTTAGTAT TTTTAAGGAT CAACCCTACT 
CAAAACAAAA AACAAAAAAA TACTCAGATT TTCTTATTAA TTATTATATC 
TTTAATGTTG TAAAAAAAAA A

Gene models with high sequence identity

  1. AT5G48385.1 [+] show detail - FRIGIDA-like protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Coil coiled-coil 0
Coil coiled-coil 0
Coil coiled-coil 0
HMMPfam Frigida-like 1.3e-102

See the detailed result >

AT5G48385.1

Model type
Protein coding
Short Description
FRIGIDA-like protein
Computational Description
FRIGIDA-like protein; CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: FRIGIDA-like protein (TAIR:AT4G14900.1); Has 1269 Blast hits to 1187 proteins in 101 species: Archae - 0; Bacteria - 22; Metazoa - 72; Fungi - 9; Plants - 1133; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-16-N16 introduced

  • F17022 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found