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  3. RAFL05-16-O12

RAFL05-16-O12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02702)

full reading [+] show sequence

Nucleotide sequence: RAFL05-16-O12 - full reading 
AGCAAACCGA AGTGGGAACG AAACCCCATG CTCCAAGTCC AATTAAATAA 
CATATGTCCA CAGAAATGTT TTCAAAATTC GAATAAGCCA CAGCAACGTG 
TCTTGTTCAT ATATCCACTA TAACCCAAAG CTGCTTCAAT GGTCGGATAT 
GGACACGTGT CAGTTAATCA GACCATCTCC AAGAAAAAAT ATCCCAAATC 
TTTCTTCCCT ATTCAGTCCC CCAATCAACA ATCCTCTTCA CATTTCTATT 
TTCTCCTCCG AGGTCGTCTC TCGACCAAAC CACAAAAACC AGAACAAAAA 
TAACTAAAAA ACAATCAGAT CTGAGATCGA ACAAAACAAC ATGAACACGT 
TAATCCCATC GGAGAAAAGA TGGATCATCA CCGGCGTTTT ACTAGCCGGT 
TTAGTTGGCG GTGCTTTGCT TTTCACAAGC TTCATACGAG CCGCTGACGA 
AACGCTCTTC CTCTGTTCCA CAGCAAGCGC CAAAAGCAGA GCGGTGGCTG 
CGGCAGCTGA TTACGAAGCG ACTCCGATTC AGCTTCAAGC GATCGTCCAC 
TACGCGACAT CTAACGTTGT CCCACAACAG AATCTTGCTG AGATCTCGAT 
CTCTTTCAAC ATCTTGAAAA AGCTAGCTCC GGCTAACTTT CTCGTGTTCG 
GTCTCGGTCG TGACTCGCTC ATGTGGGCTT CTTTAAATCC ACGTGGCAAA 
ACCTTGTTCT TGGAAGAAGA TCTTGAATGG TTTCAGAAAG TGACCAAAGA 
CTCTCCTTTC TTACGTGCGC ATCACGTGCG TTACAGGACG CAGCTTCAAC 
AAGCCGATTC GCTTCTACGT TCGTACAAAA CGGAGCCTAA GTGTTTTCCG 
GCGAAATCTT ATCTCCGGGG AAACGAGAAG TGTAAGCTAG CTCTCACGGG 
ACTGCCCGAT GAGTTCTACG ATACAGAGTG GGATCTGCTG ATGGTCGATG 
CTCCTAAAGG TTACTTCGCA GAAGCTCCGG GAAGAATGGC GGCGATTTTC 
TCGGCGGCTG TTATGGCTAG GAACCGGAAG AAACCGGGAG TTACGCACGT 
GTTCTTGCAC GATGTTAATC GGAGGGTGGA GAAGACTTTT GCCGAGGAGT 
TTTTATGCCG GAAGTATAGA GTCAACGCCG CCGGGAGGTT ATGGCATTTT 
GCTATTCCTC CGGCGGCTGC GAACGCTACG ATTGACTCTG GTGATTATAG 
GTTTTGCTAA GATTGCGACA CGATTTATCT TCTTATTTCC TCTTTTGCCC 
TTTTATTTTA CTTTTTTGAG GAATTTTATT ACAGCATTGG GTTCACTT

Gene models with high sequence identity

  1. AT1G27930.1 [+] show detail - Protein of unknown function (DUF579)
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMTigr Conserved hypothetical protein CHP01627 1.8e-84
HMMPfam Protein of unknown function DUF579 1.2e-75

See the detailed result >

AT1G27930.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF579)
Curator Summary
Function unknown. Interacts with eIF3.
Computational Description
FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF579 (InterPro:IPR021148), Conserved hypothetical protein CHP01627 (InterPro:IPR006514); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF579) (TAIR:AT1G67330.1); Has 251 Blast hits to 250 proteins in 20 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 239; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-16-O12 introduced

  • F10001 - rosette leaf::increased size / rosette leaf::epinastic / rosette leaf::present in greater numbers in organism / cauline leaf::decreased size / sporophyte vegetative stage::decreased speed / stem::abnormal
  • F14701 - rosette leaf::desaturated green / rosette leaf::decreased size / rosette leaf::abnormal / rosette leaf::increased width / stem::increased thickness / stem::abnormal / whole plant::decreased height / stem::present in greater numbers in organism
  • F20526 - Specific phenotypes were NOT observed.
  • F23516 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found