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  3. RAFL05-16-P20

RAFL05-16-P20

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03031)

full reading [+] show sequence

Nucleotide sequence: RAFL05-16-P20 - full reading 
CTTCACAATC CTCATAATCA CTTTCGAAAT TACATTTACG CTTTCTTGCA 
ATCAAATTTT CCGATCTTAA GTTCAGAAGA CGATGTCAGA GGTGGAAATA 
GAGAACGCTG CTACGATCGA AGGAAACACC GCTGCGGATG CGCCGGTGAC 
GGATGCGGCC GTTGAGAAGA AGCCTGCAGC GAAAGGACGA AAGACGAAGA 
ATGTTAAGGA AGTGAAGGAG AAGAAGACTG TTGCTGCCGC TCCGAAGAAG 
AGAACTGTTT CATCTCATCC TACTTACGAA GAGATGATTA AGGATGCGAT 
TGTTACGTTG AAAGAGAGAA CTGGATCTAG CCAATACGCG ATTCAGAAGT 
TCATCGAGGA GAAGCGTAAG GAGCTTCCTC CAACATTCAG AAAGCTGTTG 
CTTCTCAATC TGAAGAGACT CGTTGCTTCT GGGAAGCTTG TGAAGGTCAA 
AGCCTCGTTT AAACTCCCAT CGGCGTCGGC TAAAGCATCA TCCCCTAAGG 
CGGCAGCGGA GAAATCTGCT CCTGCGAAGA AGAAACCGGC GACTGTGGCG 
GTTACCAAGG CGAAGAGAAA GGTCGCTGCG GCTTCCAAGG CTAAGAAAAC 
AATCGCCGTT AAACCTAAGA CTGCTGCTGC TAAGAAAGTG ACCGCGAAGG 
CTAAGGCTAA GCCCGTTCCT CGTGCCACTG CTGCTGCAAC TAAGAGGAAA 
GCTGTTGATG CGAAGCCCAA GGCTAAGGCT AGACCAGCCA AGGCAGCCAA 
AACGGCCAAG GTTACATCTC CGGCTAAGAA AGCTGTTGCT GCCACGAAGA 
AAGTTGCTAC GGTGGCCACA AAGAAGAAGA CTCCGGTTAA GAAGGTTGTG 
AAGCCAAAGA CGGTTAAGTC TCCAGCAAAG AGGGCTTCTT CTAGGGTTAA 
GAAGTGAAGT TAGGGTTTGT AGGTAGAAGA ATGGTTAACG ATAGTTTAGA 
CTTGTATAAT TCAATCATCT TTATGCGACT TTGTTTGCTT TTCTTCTTTC 
AGTGTTCTTG TTATTCACAG TTCCTTTGGA CTACCCCTTA AATCATATAT 
AGATTTCATC AATGAAGCAA AAAG

Gene models with high sequence identity

  1. AT1G06760.1 [+] show detail - winged-helix DNA-binding transcription factor family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily "Winged helix" DNA-binding domain 3.7e-24
FPrintScan Histone H5 2.9e-09
FPrintScan Histone H5 2.9e-09
FPrintScan Histone H5 2.9e-09
HMMPfam Histone H1/H5 2.5e-23
HMMSmart Histone H1/H5 9.7e-34
HMMPanther HISTONE H1/H5 9.1e-38
Gene3D Winged helix-turn-helix transcription repressor DNA-binding 5.8e-21

See the detailed result >

AT1G06760.1

Model type
Protein coding
Short Description
winged-helix DNA-binding transcription factor family protein
Computational Description
winged-helix DNA-binding transcription factor family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Histone H5 (InterPro:IPR005819), Histone H1/H5 (InterPro:IPR005818); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT2G30620.1); Has 20265 Blast hits to 10904 proteins in 1494 species: Archae - 37; Bacteria - 8386; Metazoa - 4718; Fungi - 1128; Plants - 980; Viruses - 120; Other Eukaryotes - 4896 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-16-P20 introduced

  • F06350 - Specific phenotypes were NOT observed.
  • F13813 - seed::increased size / seed::increased length
  • F16348 - Specific phenotypes were NOT observed.
  • F16847 - Specific phenotypes were NOT observed.
  • F17511 - Specific phenotypes were NOT observed.
  • F30103 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found