1. Home
  2. Full-length cDNAs
  3. RAFL05-16-P22

RAFL05-16-P22

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17106)

full reading [+] show sequence

Nucleotide sequence: RAFL05-16-P22 - full reading 
CCAAAAAAAA AAAAAACAAA AATCCCCAAA TTACCAAAAT CCTCGGCGAC 
AAAGAGGAGA GATAGAGAGA GAGAAAGAGG CGAAAATAAT GGCGTCGATC 
CCTCCGCCGG AGCTTGACAA CGACTCACTG GCGTCATCGC CGAGATCGGA 
GTACGATAGT CAGCCACGCG TACGGTTCAT GTGTACTTTT GGAGGAAGGA 
TCTTGCCACG TCCGCCGGAT AATCAGCTCT GTTACGTCGG CGGCGATAAT 
CGCATGGTCG CTGTTCATCG TCACACTACT TTCGCCTCTC TCCTTAGTAA 
ACTTGCTAAA CTCTCCGGTA AAAGCAACAT AAGCGTGAAG TACCAGCTAC 
CAAACGAAGA TCTTGACGCG TTGATTTCCG TATCAACGGA CGAAGATGTA 
GAGAACATGA TGGACGAATA CGACCGCGTC GCACAGAATC AAAACCCACG 
CGCCTCTCGT CTTCGTCTTT TTCTCTTCAC CAAAAACGTC GCCGGAGAAG 
AAGATAACGA TAGTCGAGCT AGCAGTATCA GCTCTCTCCT CGATAGCTCT 
GTTAATCGGG AGCAATGGTT CCTCGACGCT CTTAACCTCG GTTCTTCCGC 
CGCCGCAACC GCGGTATCTA ACGGTGGGTC CGGTAGAGTC TTTGAGCGAG 
TTAGATCTGA AGTCTCGTCG ATTGTTTCTG AAGTTCCTGA TTATCTCTTT 
GGATTGGATA ATTTCGATGA AACTGCTCCG CCGCATGAGC TTCGTGATCG 
TGATCCGAGA GCTAAGATCC AACGAGAAGT CTCGACGCTT TCGGATCCTG 
GTTCGCCTCG TCGCGATGTT CCTTCGCCGT ATGGTTCGAC GTCTTCGGCT 
CCTGTGATGC GAATATCTAC ACCGGAACTT CCACCACCAG TTTTTATTAA 
ACCGGAAAGT CCAGAACCGG TTTCGACTCC GAAATCCAAT CCTCAACCGG 
AACAAGTAAT GCAACAGAGT AATCTCCCGG TTAACTCGCA ATGGCAATAT 
GCCCCTGGCC CAGGCCAACA GGTTCATTAC CAGGGTCATA CCATTCACCA 
ATCACCGGTT TATTACGTTC CTGGTTCGGT TCCGGGTAAT CATATGGTCC 
AGCAAGGAAA TCATATGGTT CAACCGGGTA ATCATATGGT ACAACCGGTT 
CAAATGCCGG GTCAGTATCT TCAACAATAC CATCATGTAC CAATGGGATA 
CCACCAACCT CAGACTCATC AGATGGCTGG TCCGGGTCAA GTATATGGTG 
GAACGGTTAG GCCGGTTATG ATGGCAGTTG ATGGAATGAA CCGGACGGGT 
TATTATGGAA TGAAAACACC CGGTCCGGTT CAAATGTATC AGCATCACAC 
TGGTATGGTT GTTCCTGGTG TAGAAGAACA ACAACAATAC AGAACCGAAA 
CGGATTCGGA TACGGGTCGG GCTTCTTAGC TGTTTGAAGA AGAAATATGA 
AAAATTATCA CATCCGGGGT TTTCGTCTTT TCATTGGAGT CGTTCTTATT 
CGTTACTGTG TGAACTGTGT ATTATTTTTT GTTTTACTTT TGTAAAATTT 
ATTTTTGTGT GTAATAATTT TGTATTACAA AATATAATGA ACAGTAAAAC 
CCAATAATAA TAACATTATA ATCTATCAAT AGCAAAAAAA AAA

Gene models with high sequence identity

  1. AT4G05150.1 [+] show detail - Octicosapeptide/Phox/Bem1p family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMSmart Octicosapeptide/Phox/Bem1p 3.30000526807186e-29
HMMPfam Octicosapeptide/Phox/Bem1p 1.2e-14

See the detailed result >

AT4G05150.1

Model type
Protein coding
Short Description
Octicosapeptide/Phox/Bem1p family protein
Computational Description
Octicosapeptide/Phox/Bem1p family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270); BEST Arabidopsis thaliana protein match is: Octicosapeptide/Phox/Bem1p family protein (TAIR:AT2G01190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-16-P22 introduced

  • F00933 - Specific phenotypes were NOT observed.
  • F18039 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found