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RAFL05-17-B11

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02711)

full reading [+] show sequence

Nucleotide sequence: RAFL05-17-B11 - full reading 
ACATCCATCA CTTATAACTA AAAACACAAA TCAAGATAAA ATGGCGGAAG 
AGCAAGCAGC GACGGCAATG GAAACATCGG CGGTGGAGAA GCAGCCAGAG 
ACGACGACAG AGGCTGAAGC ACCAAGTTTG ACGACGAAGA GGATGGTGGT 
TGCGATTGAT GAGAGCGACT CGAGCTTCTA CGCTCTCCAA TGGGTCATTG 
ACCATTTCTC TAATCTTTTA TTGACCACAG CGGCAGCTGA GGCGGAAAGT 
GGAATGCTCA CGGTGATTCA TGTGCAGTCC CCTTTCAATC ACTTTGCTGC 
CTTTCCGGCT GGACCGGGCG GCGCCACAGC AGTGTACGCA TCTTCATCAA 
TGATAGAGTC AGTGAAAAAG GCACAACAAG AGACCTCTGC TGCCCTTCTC 
TCTCGCGCTC TCCAAATGTG CCGAGCCAAG CAGATACGTA CTGAAACTCT 
AGTGCTAGAA GGCGAGGCGA AGGAGATGAT TTGTGAGGCG GTGGAGAAAA 
TGCACGTTGA TCTTCTCGTT GTGGGTAGTC GTGGCCTTGG CAAGATCAAA 
AGAGCGTTTC TTGGGAGCGT TAGCGATTAC TGCGCTCATC ACGCCAACTG 
CCCCATCCTT ATTGTCAAGC CACCTAAGGA GATGACTAAG TAATATGGAG 
CTGTTTACAT GTTTGGGTTA TTAGTACGAA TTTTATAATG AGTGTGCCAT 
AATTTACCTA AAAAAT

Gene models with high sequence identity

  1. AT3G11930.2 [+] show detail - Adenine nucleotide alpha hydrolases-like superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
FPrintScan Universal stress protein A 1.7e-16
FPrintScan Universal stress protein A 1.7e-16
FPrintScan Universal stress protein A 1.7e-16
superfamily Adenine nucleotide alpha hydrolases-like 1.6e-30
Gene3D Rossmann-like alpha/beta/alpha sandwich fold 1.4e-29
HMMPfam UspA 3.4e-32

See the detailed result >

AT3G11930.2

Model type
Protein coding
Short Description
Adenine nucleotide alpha hydrolases-like superfamily protein
Computational Description
Adenine nucleotide alpha hydrolases-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Universal stress protein A (InterPro:IPR006015); BEST Arabidopsis thaliana protein match is: Adenine nucleotide alpha hydrolases-like superfamily protein (TAIR:AT3G58450.1); Has 5467 Blast hits to 5289 proteins in 1122 species: Archae - 381; Bacteria - 3940; Metazoa - 138; Fungi - 108; Plants - 754; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-17-B11 introduced

  • F02624 - Specific phenotypes were NOT observed.
  • F12050 - Specific phenotypes were NOT observed.
  • F15925 - Specific phenotypes were NOT observed.
  • F19451 - seed::increased size / seed::increased length
  • F21735 - seed::increased size / seed::increased length
  • F23915 - Specific phenotypes were NOT observed.
  • F27023 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found