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  3. RAFL05-17-B12

RAFL05-17-B12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17107)

full reading [+] show sequence

Nucleotide sequence: RAFL05-17-B12 - full reading 
GAGAACGCAC GGTACAACTA CTCCCGCCCT TGGAAAACAG GATCCAAGTG 
GGGTTGAATT ATGGAGGATG AGACGAGATC AACGTCATCA CTTTCCGATA 
TAGCTATTAG TATTATCGAC GAAGGTCCTC TTTCTCCATT ACGACAACGT 
AGTGAAAGAA GTGTTGTATC TCATATCAAA CGCAACTTAC AGTCATCGGG 
GAAACCACTG ATTCTTTTGG AATCAGCTGG TAAGGCGTCC TGCTGCATCT 
TCAGAATCCC TGATAGCCTC GCAGAGGTGA ATCCTAAAGC CTATAAGCCC 
AAAGTTGTTT CCATTGGTCC TTATCATTAC GGAGAAAATC ACCTCCAAAT 
GATTCAGCAG CACAAGTTTC GGTTTCTGGA GCTTTTCGTA GACAGGGCAA 
CAAAGAAAGG AATGGACGAA AACGTCTTGT ATGCGGCAGT AGGTGCTTTG 
CAACACAAGA TAAGAGCTTC TTATTCTGAG GAACTTAGGA TAGAAAAATC 
AGAACTGGTG TCTATGATGA TTTTGGATGG GTGCTTCATT CTCATGTTGT 
TACTTATCGT GTCAAGAAAG ATAGATTTGG ATATGAATAA GGATCCAATC 
TTCACGATCC CCTGGATTTT GGCATCTATT CAGAGTGATC TTCTCCTCTT 
GGAAAATCAG GTCCCTTTCT TTGTTCTTCG AACTATATTT GATAAATCAG 
GAATAGGGTC ACCTGGTGAT CTAAACAGGA TGGCGTTTAG CTTCTTCAAC 
CTCTCAATAG ATAAACCAGA TACATATTGG GCGAAACACA GAGACCGCGG 
GGCTAAACAT CTTCTTGACC TCAACCGTAA GACCTTCATA CCTAGCATGA 
GATCTATGGG TGAATCAGAA ACAACACCAT CCTCGAAATT TCAACACTCT 
AAGGGTAAAT CCGGAGAAGT ATCATCGTCA GAGTCTACAT TTCCGTTGAT 
ACTGTCGGCC AAAAGACTTC GCCTCCAAGG GATAAAGTTC AGGTTAAGGA 
GTGATGCTGA ATCAATATTA GATATAAAAT TAAAGAAGAA CAAGCTTCAG 
ATACCACTGT TAAGATTGGA TGGTTTCATC AGCTCAATCT TCCTCAACTG 
TGTTGCCTTT GAACAGTTTT ACACAGAGAG TACCAACGAC ATAACAAGCT 
ACGTGGTTTT CATGGGATGT CTTCTAAACG ATCAGGAAGA TGCTACTTTC 
TTGAACAACG ACAAGCGGAT CATAGAGAAC TACTTTGGCA ACGAGAATGA 
GGTATCACAG TTTTTCAAAA CTATATGTAA AGATGTTGTA TTTGACACAC 
GTAGAAGTTA CTTACGGAAT GTGTTTGAGG GAGTTAACGA GTACACCTCC 
AAAACGTACA ATGGAGTATG GGCTGGCTTT AGGCACACGC ACTTTGAGTC 
ACCATGGACT GCTCTGTCAT CCTTTGCTGT TGTTTTCGTT ATTCTTCTTA 
CCATGACGCA AGCCGCTTAT GCGATTCGTT CCTACTATCA CGATACAGAG 
TGAGATGGAA ACTCAGCTTC TCCATAGGGG CTTCCTTCGG GAAAATCACG 
TGAACTACTT GTTCTGTTTT ATCCGCTACA AATGTCATTC GCGCTTTAAT 
TAGACCCGCA CATACGTGCA GGATTTCATA TTTTTAAAAA TATGGTGTAT 
TAAATTTATA TTCAATTTAG TTTTTTCTAA AAAAAAAA

Gene models with high sequence identity

  1. AT3G47250.3 [+] show detail - Plant protein of unknown function (DUF247)
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

See the detailed result >

AT3G47250.3

Model type
Protein coding
Short Description
Plant protein of unknown function (DUF247)
Computational Description
Plant protein of unknown function (DUF247); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT3G47200.2); Has 1106 Blast hits to 1004 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1106; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-17-B12 introduced

  • F22329 - rosette leaf::increased length / rosette leaf::increased width / rosette leaf::abnormal / stem::present in fewer numbers in organism

Mutant lines with disrupted or induced

1 mutant line founds