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  3. RAFL05-17-C10

RAFL05-17-C10

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07375)

full reading [+] show sequence

Nucleotide sequence: RAFL05-17-C10 - full reading 
TGAGACACTC GCTTGCGTGT CTCCCTCTCT TAAACTCTCT CTTTCTCTTT 
CTCTTTTGGT TTCTGGGTTA TTTCAAAGAA AAGAATCAAG AAACCCCTCT 
TTCTCTCTTA CAAGAATCCC ATCATGGTGT TTGGAAAAGG GTCAAACCTT 
GACAGATTCC TTCATTGCAC AACACCTGTA GTGCCACCCC AATCTCTATC 
CAAGGCGGAG ATTAGGAGTT TGAATAGGAT TTGGCATCCA TGGGAGAGAC 
AAAAGGTTGA GTTTTTCAGA TTGAGTGATC TATGGGATTG TTATGATGAA 
TGGAGTGCTT ATGGAGCTGG TGTTCCAATT CGTCTCTCTA ATGGAGAATC 
TCTTGTTCAA TATTATGTTC CCTATCTCTC TGCTATTCAG ATTTTCACCT 
CTCGTTCTTC CTTGATCCGC TTAAGGGATG ATTCTGAAGA TGGGGAAAGC 
AGAGATTCGT TTAGTGATTC ATATAGTGAT GAGAGTGAAA GTGATAAACT 
TTCGAGATGT GCTTCTGATG AAGGACTTGA ACATGACGCT CTCTTGCATC 
CTAATGATCG GTTGGGATAT CTTTATCTGC AATACTTTGA GAGATCAGCT 
CCTTATGCTC GAGTTCCTCT CATGGATAAG ATCAATGAAT TGGCTCAAAG 
GTACCCGGGA CTAATGTCGT TGCGAAGCGT AGATCTTTCC CCGGCAAGTT 
GGATGGCGGT AGCGTGGTAC CCTATTTACC ATATTCCAAT GGGAAGGACC 
ATCAAAGATT TGTCCACTTG TTTCCTCACT TATCACACTC TTTCATCTTC 
TTTCCAAGAT ATGGAGCCAG AAGAAAATGG CGGGGAAAAG GAGAGGATCC 
GGAAGGAAGG AGAAGGTGTA ACTTTGCTTC CTTTTGGGTT AGCCACTTAT 
AAGATGCAAG GCAATGTTTG GCTCTCGGAA GACGATCAAG GTCAAGATCA 
AGAGCGAGTT CTTTCGCTTC TAAGTGTTGC GGATTCTTGG CTAAAACAGC 
TAAGAGTCCA ACACCATGAC TTCAACTACT TCTCAAGAAT GGCTCACCGT 
GGCTGAAACA AATCCGTTGC TATATACTGA TGAGTTCAAA TGTAGATTTT 
GTATCTCTTT TTGTTTTTCT TGTTGGTCTC AAGTGGCAAG GAGATTACTT 
TTTTCCCTGG TCGCAATATA CCGTGTTTGT CCAGTGGTTG GAGTAGCAGT 
GGCAGCCGTG AAGAGGACTG AGCGTTTCCT TAACACACAA GTACAGCGGT 
TTCAACGTTT TGGGTGTAGA ATAGCTTTAA AGTAGCATCA ATGGGAGATG 
TCATATATTA TAAGTGCTGA TTTGTTGAAA AGAGTGGTTT CTTGTTTCTT 
GATAAACATT GATTGAGAGG GTCTTGTTCT TGTACCTCAG TAATACTTTA 
AAGGAGTAGC AAGTGTAACA ATCTCATCAT ATTTGTAACT GTTTTTACCC 
AAATACATAA ATCAAAGCTG ATGATTTTTG TGTGTTTT

Gene models with high sequence identity

  1. AT4G03420.1 [+] show detail - Protein of unknown function (DUF789)
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

See the detailed result >

AT4G03420.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF789)
Computational Description
Protein of unknown function (DUF789); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF789 (InterPro:IPR008507); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF789) (TAIR:AT1G03610.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-17-C10 introduced

  • F29904 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

9 mutant lines found